| Literature DB >> 30025114 |
Nelson S Winkler1, Margherita Milone2, Jennifer M Martinez-Thompson2, Harish Raja3, Ross A Aleff4, Sanjay V Patel1, Michael P Fautsch1, Eric D Wieben4, Keith H Baratz1.
Abstract
Purpose: RNA toxicity from CTG trinucleotide repeat (TNR) expansion within noncoding DNA of the transcription factor 4 (TCF4) and DM1 protein kinase (DMPK) genes has been described in Fuchs' endothelial corneal dystrophy (FECD) and myotonic dystrophy, type 1 (DM1), respectively. We prospectively evaluated DM1 patients and their families for phenotypic FECD and report the analysis of CTG expansion in the TCF4 gene and DMPK expression in corneal endothelium.Entities:
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Year: 2018 PMID: 30025114 PMCID: PMC6005624 DOI: 10.1167/iovs.17-23160
Source DB: PubMed Journal: Invest Ophthalmol Vis Sci ISSN: 0146-0404 Impact factor: 4.799
Characteristics of Probands With Myotonic Dystrophy, Type 1 and Their Family Members
Figure 1Family pedigree demonstrating cosegregation of DM1 with FECD. All family members with DM1 have FECD, and those without DM1 did not show evidence of FECD. Subject ID [Age]; *DM1 by history only.
Figure 2Sashimi plot of RNASeq data confirming gene expression within the DMPK gene. (A) Corneal endothelium from a patient undergoing keratoplasty for pseudophakic bullous keratopathy, (B) corneal endothelium from a patient with TCF4 repeat expansion–associated FECD, (C) normal striated muscle, and (D) DM1 striated muscle. The vertical axis for each plot depicts the number of sequencing reads that map to that location in the genome. Muscle data were downloaded from the GEO DataSet GSE86356 (available in the public domain, https://www.ncbi.nlm.nih.gov/gds/?term=GSE86356%5BAccession%5D). Note that the coordinates for this gene displayed at the bottom of the figure are from UCSC Genome Browser (available in the public domain, https://genome.ucsc.edu) Human Genome GRCh37/hg19.
Figure 3Sashimi plot of RNASeq data confirming gene expression within the TCF4 gene in the same samples as Figure 2, including (A) corneal endothelium from a patient undergoing keratoplasty for postoperative corneal edema, (B) corneal endothelium from a patient with TCF4 repeat expansion–associated FECD, (C) normal striated muscle, and (D) DM1 striated muscle. The vertical axis for each plot depicts the number of sequencing reads that map to that location in the genome. Muscle data were downloaded from the GEO DataSet GSE86356 (available in the public domain, https://www.ncbi.nlm.nih.gov/gds/?term=GSE86356%5BAccession%5D). Note that the coordinates for this gene displayed at the bottom of the figure are from UCSC Genome Browser (available in the public domain, https://genome.ucsc.edu) Human Genome GRCh37/hg19.