Literature DB >> 30024164

Vibrational Relaxation in EDTA Is Ion-Dependent.

Sean C Edington1, Carlos R Baiz1.   

Abstract

Ion binding by carboxylate groups is common in biomolecules such as metalloproteins, but dynamical aspects of ion binding are not fully understood. We present ultrafast spectroscopic measurements of vibrational relaxation in the ion-coordinating carboxylate groups of EDTA, which we use as a model of carboxylate-mediated ion binding, as EDTA binds a series of divalent and trivalent metal ions with high affinity. The measurements are interpreted using a Redfield-based anharmonic model of vibrational relaxation that rationalizes trends in vibrational lifetimes in terms of vibrational energy transfer between EDTA's asymmetric carboxylate stretching vibrational modes and lower-lying modes. Results show ion-dependent changes in complex structure and dynamics well outside the temporal and spatial resolution of common structural methods and demonstrate how vibrational relaxation measurements may contribute to exploration of ion-binding dynamics on ultrashort length and time scales.

Entities:  

Year:  2018        PMID: 30024164     DOI: 10.1021/acs.jpca.8b06075

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  4 in total

1.  Physiological Calcium Concentrations Slow Dynamics at the Lipid-Water Interface.

Authors:  Mason L Valentine; Alfredo E Cardenas; Ron Elber; Carlos R Baiz
Journal:  Biophys J       Date:  2018-09-06       Impact factor: 4.033

2.  Non-Additive Effects of Binding Site Mutations in Calmodulin.

Authors:  Sean C Edington; D Brent Halling; Suzanna M Bennett; Thomas R Middendorf; Richard W Aldrich; Carlos R Baiz
Journal:  Biochemistry       Date:  2019-06-04       Impact factor: 3.162

3.  Lanthanide-dependent coordination interactions in lanmodulin: a 2D IR and molecular dynamics simulations study.

Authors:  Stephanie Liu; Emily R Featherston; Joseph A Cotruvo; Carlos R Baiz
Journal:  Phys Chem Chem Phys       Date:  2021-10-06       Impact factor: 3.676

4.  Proton-modulated interactions of ions with transport sites of prokaryotic and eukaryotic NCX prototypes.

Authors:  Bosmat Refaeli; Stephanie Liu; Reuben Hiller; Moshe Giladi; Carlos R Baiz; Daniel Khananshvili
Journal:  Cell Calcium       Date:  2021-09-20       Impact factor: 6.817

  4 in total

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