Synthesis of iminosugars 1, 2, 3a, and 4a and N-alkyl (ethyl, butyl, hexyl, octyl, decyl, and dodecyl) derivatives 3b-g and 4b-g spiro-linked with morpholine-fused 1,2,3-triazole is described. Conformation of the piperidine ring in each spiro-iminosugar was evaluated by 1H NMR spectroscopy, and conformational change in N-alkylated compounds 4b-g with respect to parent spiro-iminosugar 4a is supported by density functional theory calculations. Out of 16 new spiro-iminosugars, the spiro-iminosugars 3a (IC50 = 0.075 μM) and 4a (IC50 = 0.036 μM) were found to be more potent inhibitors of α-glucosidase than the marketed drug miglitol (IC50 = 0.100 μM). In addition, 3a (minimum inhibition concentration (MIC) = 0.85 μM) and 4a (MIC = 0.025 μM) showed more potent antifungal activity against Candida albicans than antifungal drug amphotericin b (MIC = 1.25 μM). In few cases, the N-alkyl derivatives showed increase of α-glucosidase inhibition and enhancement of antifungal activity compare to the respective parent iminosugar. The biological activities were further substantiated by molecular docking studies.
Synthesis of iminosugars 1, 2, 3a, and 4a and n class="Chemical">N-alkyl (ethyl, butyl, hexyl, octyl, decyl, and dodecyl) derivatives 3b-g and 4b-g spiro-linked with morpholine-fused 1,2,3-triazole is described. Conformation of the piperidine ring in each spiro-iminosugar was evaluated by 1H NMR spectroscopy, and conformational change in N-alkylated compounds 4b-g with respect to parent spiro-iminosugar 4a is supported by density functional theory calculations. Out of 16 new spiro-iminosugars, the spiro-iminosugars 3a (IC50 = 0.075 μM) and 4a (IC50 = 0.036 μM) were found to be more potent inhibitors of α-glucosidase than the marketed drug miglitol (IC50 = 0.100 μM). In addition, 3a (minimum inhibition concentration (MIC) = 0.85 μM) and 4a (MIC = 0.025 μM) showed more potent antifungal activity against Candida albicans than antifungal drug amphotericin b (MIC = 1.25 μM). In few cases, the N-alkyl derivatives showed increase of α-glucosidase inhibition and enhancement of antifungal activity compare to the respective parent iminosugar. The biological activities were further substantiated by molecular docking studies.
Glycosidases play a
key role in intestinal digestion, post-translational
processing of glycoproteins, endoplasmic reticulum-associated degradation
mechanisms, and the lysosomal catabolism of glycoconjugates.[1] Any malfunction in this process leads to discomforts
in the body, and in case of long-run processes, one suffers from disease.[2] For example, disorders in functioning of amylase
and/or α-glucosidase enzymes results in alten class="Species">ration in the blood
glucose level, a condition noted as diabetes mellitus type-II (DM-II).[3] Patients suffering from long-term DM-II develop low immunity[4] and fall as a prey to a variety of comorbidities,
such as retinopathy,[5] nephropathy,[6] neuropathy,[7] infections,[8] and many more.[9] In
particular, sugar damp in diabetes nurtures the infections of Candida albicansyeast in mouth, skin, nails, and
surroundings of urethral openings.[10] In
such cases of comorbidity discomforts, an effective treatment is a
challenge and prescription of two separate drugs is a common medicinal
practice. Among a variety of antidiabetic drugs, an iminosugar (cyclic
sugars with the nitrogen atom in place of the ring oxygen atom) class
of compound, namely, glycet/miglitol I (Figure ) is consumed for the treatment
of DM-II,[11] whereas, for the treatment
of fungal infection, 1,2,4-triazole-containing drug fluconazole[12] is practiced. Alternatively, hybrid/chimeric
drugs, in which two pharmacophores are present in one molecule and
thus showing dual therapeutic mechanism, would have been the most
appropriate choice.[13,14] In this direction, a number of
hybrid drugs were synthesized and evaluated for biological activities.[14] Among these, iminosugars attached with other
pharmacophores have attracted a great deal of interest.[1,15] For example, iminosugar fused with tetrazole II (Figure ) showed antitubercular
as well as α-rhamnosidase inhibitory activity.[16] Iminosugar fused with imidazole ring, namely, nagstatin
(III) is an N-acetyl-β-glucosaminidase
inhibitor and acts as an anticancer agent,[1,17] whereas
iminosugar fused with 1,2,4-triazole IV shows inhibition
toward α-mannosidase along with anticancer activity.[1] A few examples of the iminosugarsspiro-linked
with other pharmacophores are also known.a,[18] Laroche et al. reported a titanium-mediated
aminocyclopropanation of nitriles to give pyrrolidine iminosugarspiro-linked
with cyclopropane V.[19] Vankar
and co-workers utilized the RCM strategy in the synthesis of iminosugarspiro-linked with the sugar pyranose VI.[20] Compain and co-workers used C–H amination and RCM
methodology to build 5-azaspiro[3,4]octane VII skeleton.[21]
Figure 1
Known iminosugars and target molecules.
Known iminosugars and target molecules.Our group has exploited Corey-link approach with
3-oxo-1,2;5,6-diisopropylidene-d-gluco-furanose to give n class="Chemical">C3-azido-3-formyl-substituted d-gluco-furanose that
was elaborated toward the synthesis of
spiro-iminosugars VIIIa/VIIIb, which showed
a promising α-glucosidase inhibitory activity.[22] In the continuation of our work, we now report the synthesis
of tricyclic azepine 1, piperidineiminosugars 2, 3a–g, and iminosugars 4a–g spiro-linked with the morpholine-fused
1,2,3-triazol. The conformations 1C4/4C1 were obtained
on the basis of the 1H NMR study and substantiated by density
functional theory (DFT) studies. The glycosidase inhibitory and antifungal
(on Candida albicansyeast cells) activities
were evaluated. Among the 16 targeted molecules, iminosugar 3a (IC50 = 0.075 μM) and iminosugar 4a (IC50 = 0.036 μM) were found to be highly
potent α-glucosidase inhibitors compared to miglitol I (IC50 = 0.100 μM). In addition, 3a (minimum inhibition concentration (MIC) = 0.85 μM) and 4a (MIC = 0.025 μM) were noticed to be highly potent
antifungal agents compared to marketed drug amphotericin b (MIC =
1.25 μM). As the hybrid drugs are known to increase cellular
uptake that augment the specific pharmacological activity,b,[23] an analogous
trend was noticed with the spiro-iminosugars 1, 2, 3a–g, and 4a–g in the augmentation of the glycosidase inhibitory
as well as antifungal activity due to the presence of iminosugar and
triazole pharmacophores in the same molecule. Our results toward the
synthesis, conformations, glycosidase, and antifungal activity as
well as molecular docking studies of spiro-iminosugars are described
herein.
Results and Discussion
Synthesis of Spiro-Iminosugars (1, 2, 3a–g, and 4a–g)
Recently, we have studied the role of gem-disubstituent
effect in intramolecular alkyne-azide 1,3-dipolar cycloaddition (AAC)
reaction with O-propargylated n class="Chemical">azido compounds IXa–d by experimental kinetic data and thermodynamic parameters
obtained from computational studies (Figure ).[24] During this
study, we noticed that the AAC reaction of 1,2;5,6-di-O-isopropylidene-3-O-propargyl-3-azido-d-glucofuranose IXd in the presence or absence of solvent
occurred spontaneously at ambient temperature to afford morpholine-fused
1,2,3,-triazole moiety spirocyclic with d-gluco-furanose 5 in 89% yield. We thought of exploiting the same intermediate 5, by suitable manipulation of 5,6- and 1,2-O-isopropylidene groups of d-gluco-furanose, for the synthesis
of targeted spiro-iminosugars.
Figure 2
Catalyst-free AAC reaction in IXa–d.
Catalyst-free AAC reaction in IXa–d.As shown in Scheme , selective deprotection of 5,6-O-isopropylidene
group in 5 with n class="Chemical">AcOH/H2O (3:2) at 60 °C
afforded diol 6. The primary hydroxyl group in 6 was protected as −OTs group using
Bu2SnO and TsCl in triethylamine to get 7,
which on nucleophilic displacement of C6–OTs group with NaN3 in dimethylformamide (DMF) afforded
C6– azido compound 8 in 89% yield. In the next
step, hydrolysis of 1,2-O-isopropylidene group in 8 with TFA/H2O (3:1) at 0 °C gave an anomeric
mixture of hemiacetal (as evident from the 1H NMR of crude
product), which on intramolecular reductive aminocyclization under
hydrogenation condition, using 10% Pd/C in methanol at 80 psi pressure,
gave azepineiminosugar spiro-linked with the morpholine-fused 1,2,3-triazole 1 in 71% yield.
Scheme 1
Synthesis of Spiro-Iminosugars 1 and 2
Reagents and conditions: (i)
60% aq AcOH, 60 °C, 3 h, 92%; (ii) Bu2SnO, TsCI, tetraethylammonium
(TEA), room temperature (RT), 1 h, 97%; (iii) NaN3, tetrabutylammonium
iodide (TBAI), DMF, 95 °C, 3 h, 89%; (iv) (a) TFA/H2O (3:1), 0 °C, 3 h, (b) 10% Pd/C, H2, 80 psi, 24
h, RT, 71%; (v) BnBr, NaH, THF, 0 °C to RT, 3 h, 75%; (vi) (a)
TFA/H2O (3:1), RT, 3 h, (b) NalO4, acetone/water
(8:2), 3 h, (c) 10% Pd/C, H2, 120 psi, 30 h, 68%.
Synthesis of Spiro-Iminosugars 1 and 2
Reagents and conditions: (i)
60% aq AcOH, 60 °C, 3 h, 92%; (ii) n class="Chemical">Bu2SnO, TsCI, tetraethylammonium
(TEA), room temperature (RT), 1 h, 97%; (iii) NaN3, tetrabutylammonium
iodide (TBAI), DMF, 95 °C, 3 h, 89%; (iv) (a) TFA/H2O (3:1), 0 °C, 3 h, (b) 10% Pd/C, H2, 80 psi, 24
h, RT, 71%; (v) BnBr, NaH, THF, 0 °C to RT, 3 h, 75%; (vi) (a)
TFA/H2O (3:1), RT, 3 h, (b) NalO4, acetone/water
(8:2), 3 h, (c) 10% Pd/C, H2, 120 psi, 30 h, 68%.
For the synthesis of spiro-iminosugar 2, it is necessary
to remove anomeric C1 n class="Chemical">carbon atom in compound 8, for
which it is necessary to protect C5–OH group
with benzyl derivative. Thus, 8 was reacted with NaH
and benzyl bromide in THF to get 6-azido 5-benzyloxy derivative 9 (Scheme ). Hydrolysis of 1,2-acetonide in 9 with TFA/H2O (3:1) followed by treatment with NaIO4 in acetone/H2O (8:2) and intramolecular reductive aminocyclization of C6–
azido group with C2– formyl group using H2 in 10%
Pd/C at 120 psi afforded piperidineiminosugar spiro-linked with morpholine-fused
1,2,3-triazole 2 in 68% yield.
The synthesis of
iminosugar 3a started from the n class="Chemical">diol 6. Thus,
reaction of 6 with NaIO4 in
acetone/H2O (8:2) at 0 °C to RT followed by treatment
with NaBH4 in MeOH at 0 °C afforded d-xylofuranose
derivative 10 (Scheme ). Compound 10 was treated with TsCl in
pyridine to give −OTs derivative 11, which on nucleophilic displacement using NaN3 in DMF
afforded C5– azido compound 12. Finally, hydrolysis
of 1,2-acetonide group in 12 with TFA/H2O
(3:1) followed by intramolecular aminocyclization using H2 in 10% Pd/C at 100 psi afforded 3a in 86% yield. In
general, the N-alkylated derivatives of iminosugars showed enhanced
glycosidase inhibitory activity compared to their parent iminosugars.[25] Thus, reaction of 3a with different
alkyl bromides (alkyl = ethyl, butyl, hexyl, octyl, decyl, and dodecyl)
in the presence of K2CO3 in DMF at 80 °C
afforded corresponding N-alkyl derivatives 3b–g in good yield (Scheme ).
Scheme 2
Synthesis of Spiro-Iminosugars 3a–g and 4a–g
Reagents and conditions: (i)
(a) NalO4, acetone/water (4:1), 0 °C to RT 2 h, (b)
NaBH4, MeOH, 0 °C, 1 h, 88% two steps; (ii) TsCI,
pyridine, DCM, 0 °C to RT, 4 h, 95%; (iii) NaN3, TBAI,
DMF, 95 °C, 6 h 86%; (iv) 10% Pd/C, H2, 100 psi, 30
h, RT, 86%; (v) for b ethylbromide, for c butylbromide, for d hexylbromide, for e octylbromide, for f decylbromide, for g dodecylbromide, K2CO3, DMF, 80 °C, 1
h, and for 3b–g, 60 °C, 2 h
for 4b–g; (vi) TBDMSCI, imidazole,
DCM, 2 h, RT, 95%; (vii) (a) OTf2, pyridine, DMAP, DCM,
0 °C, 30 min, (b) NaN3, DMF, 65 °C, 1 h, 92%
two steps; (viii) (a) TFA/H2O (3:1), 3 h, 0 °C, (b)
10% Pd/C, H2, 120 psi, 24 h, RT, 78%.
Synthesis of Spiro-Iminosugars 3a–g and 4a–g
Reagents and conditions: (i)
(a) NalO4, acetone/n class="Chemical">water (4:1), 0 °C to RT 2 h, (b)
NaBH4, MeOH, 0 °C, 1 h, 88% two steps; (ii) TsCI,
pyridine, DCM, 0 °C to RT, 4 h, 95%; (iii) NaN3, TBAI,
DMF, 95 °C, 6 h 86%; (iv) 10% Pd/C, H2, 100 psi, 30
h, RT, 86%; (v) for b ethylbromide, for c butylbromide, for d hexylbromide, for e octylbromide, for f decylbromide, for g dodecylbromide, K2CO3, DMF, 80 °C, 1
h, and for 3b–g, 60 °C, 2 h
for 4b–g; (vi) TBDMSCI, imidazole,
DCM, 2 h, RT, 95%; (vii) (a) OTf2, pyridine, DMAP, DCM,
0 °C, 30 min, (b) NaN3, DMF, 65 °C, 1 h, 92%
two steps; (viii) (a) TFA/H2O (3:1), 3 h, 0 °C, (b)
10% Pd/C, H2, 120 psi, 24 h, RT, 78%.
Iminosugar 4a was prepared from compound 6 (Scheme ). Thus,
selective protection of C6– primary hydroxy functionality in 6 with n class="Chemical">TBDMSCl in the presence of imidazole in dry dichloromethane
afforded C6–OTBDMS compound 13. Reaction of 13 with triflic anhydride in Et3N in dry dichloromethane
afforded C5–OTf derivative, which was directly
treated with NaN3 in DMF to get C5– azido derivative 14 with inversion of configuration at C5, as evident from
the 1H NMR spectrum (J4,5 =
1.5 Hz in l-ido derivative against J4,5 = 6.0 Hz in d-gluco derivative in 13). Finally, cleavage of 1,2-acetonide group in 14 with
TFA/H2O (3:1) and intramolecular reductive aminocyclization
with H2 in 10% Pd/C in MeOH at 120 psi and room temperature
afforded 4a in 78% yield. N-Alkylations of 4a with alkyl bromides (alkyl = ethyl, butyl, hexyl, octyl, decyl,
and dodecyl) using K2CO3 in DMF at 60 °C
afforded N-alkyl iminosugars 4b–g, respectively (Scheme ).
Conformational Analysis for 2, 3a–g, and 4a–g
It is
known that six-membered piperidinen class="Chemical">iminosugars exist in 4C1 or 1C4 conformations, depending on the substituents present on the
ring.[26] These conformations play a key
role in deciding the binding property of iminosugars with enzymes
rendering the glycosidase inhibition activity.[27] In view of this fact, conformational aspects of newly synthesized
spiro-linked iminosugars 2, 3a–g, and 4a–g were studied
using 1H NMR spectroscopy at neutral pH. In case of iminosugar 2, the assignment of H3 and H4 proton signals was difficult
as these protons were obscured in the deuterated water (HOD). To resolve
the spectra, we studied the temperature-dependent 1H NMR
spectrum of 2 in D2O as the HOD signal at
δ 4.85 and 22 °C is known to shift upfield with increasing
the temperature, and at 72 °C, it appears at δ 4.30.[28] Therefore, the 1H NMR spectrum of 2 in D2O was recorded at different temperatures
of 22, 32, 52, and 72 °C (Figure S13). At 72 °C, the doublet at δ 4.72 with J = 3.2 Hz was assigned to H3 and a narrow multiplate at δ 4.20
was assigned to H4 on the basis of the DEPT-135, 1H–1H COSY, and 1H–13C HSQC NMR techniques
(Figures S14–S16). The protons appearing
at δ 3.10 (dd, J = 14.4, 1.5 Hz, 1H) and δ
2.97 (dd, J = 14.4, 2.0 Hz, 1H) were assigned to
H5e and H5a, respectively. Other signals were unchanged, indicating
no change in the conformation of 2 even at high temperature.
With these 1H NMR data, two conformations 4C1 and 1C4 were considered for compound 2. The coupling constants
between H5a (axial) and H4 and between H4 and H3 are decisive in determining
the conformation.
In the 1H NMR sn class="Chemical">pectrum of 2, a small coupling constant value between H5a/H5e and H4
(J ≈ 1.7 Hz) indicated the cis-relative stereochemistry
with the equatorial orientation of H4 (Figure ). In accordance with this, H3 (axial) appeared
as a doublet with a small coupling constant value (J4,5 = 3.2 Hz), showing cis-relative stereochemistry between
H3 and H4. On the basis of these data, the 1C4 conformation was assigned to spiro-iminosugar 2 (Figure ). The single crystal for 2 was developed in CHCl3/MeOH, and X-ray crystallographic analysis supported the 1C4 conformation (Figure ).
Figure 3
Conformations of spiro-iminosugars 2, 3a–g, and 4a–g and ORTEP diagram of 2 and 3a.
Conformations of spiro-iminosugars 2, 3a–g, and 4a–g and ORTEP diagram of 2 and 3a.The spiro-linked n class="Chemical">iminosugar 3a is symmetric. Therefore,
H1 and H5 protons (both axial and equatorial) as well as H2 and H4
protons are identical. The equivalent H1a and H5a showed dd at δ
2.84 with J = 13.4 and 10.8 Hz. The large coupling
constant of 10.8 Hz between H1a and H2 or between H5a and H4 requires
axial orientation of both H2 and H4 protons with trans-relative stereochemistry,
thus suggesting the 4C1 conformation
to 3a (Figure ). The single crystal of 3a (Figure ) was obtained in CHCl3/MeOH, and X-ray crystallographic study supported the 4C1 conformation. The N-alkyl derivatives
of 3a, namely, 3b–g also
showed 4C1 conformation analogous
to parent compound 3a on the basis of their nearly identical J values (Figure ).
In case of spiro-linked n class="Chemical">iminosugar 4a, the H1a (axial)
proton appeared at δ 3.07 as a dd (Figure ) with J = 14.8 and 3.3
Hz and H1e was observed at δ 3.60 as dd with J = 14.4 and 3.3 Hz. Accordingly, H2 appeared at as a triplet with J = 3.3 Hz. The small coupling constant value between H1a
and H2 requires equatorial orientation of H2 (cis-relative stereochemistry),
thus accounting for the 1C4 conformation of compound 4a. This fact is further supported
by H4, which appeared as a doublet at δ 4.11 with small J4,5 = 2.6 Hz, indicating equatorial orientation
of H4. We presume that the 1C4 conformation is stabilized due to the equatorial orientation of
CH2OH as well as intramolecular H-bonding between the C2
and C4–OH groups, as shown in Figure . In case of N-alkyl derivatives 4b–g, we noticed the change in conformation
(Figure ) as H1a appeared
as dd with J ≈ 12.9 and ≈ 8.0 Hz. The
large coupling constant between H1a and H2 requires relative trans-diaxial
orientation suggesting 4C1 conformation.
The conformational preferences were supported by the DFT calculations.
Thus, DFT-optimized geometries of conformations 1C4/4C1 for compounds 3a, 3c, 4a,
and 4c were subjected for hydrogen-bonding interaction
analysis (Table S1) and are represented
in Figure .c
Figure 4
Geometrically DFT-optimized conformations of 3a, 3c, 4a, and 4c and their
energies.
Geometrically DFT-optimized conformations of 3a, 3c, 4a, and 4c and their
energies.As shown in Figure a, the adopted 4C1 conformation
of 3a that is stabilized by intramolecular O6···H–O4,
N3···H–O2, and O2···H–C6
hydrogen-bonding interactions was found to be energetically more stable
by −5.64 kcal/mol over its 1C4 conformation. In 4C1 conformation, the O6···H–O4 interaction was
found to be strong as compared to 1C4 conformation. Further, the weak interactions between N3···H–C2
and N3···H–C4 provided additional stability
to 4C1 conformation. Similarly,
N-butyl analogue 3c also adopted the same 4C1 conformation, which is stable by −9.41
kcal/mol as compared to its 1C4 conformation (Figure b, Table S1). This conformation was stabilized
by n class="Chemical">hydrogen-bonding interactions between O6···H–O4,
N3···H–O2, and N3···H–C2.
In case of compound 4a, the DFT-optimized 1C4 conformation, which is stabilized
by O7···H–O4, O4···H–O2,
O6···H–N1, and N1···H–O2
interactions (Figure c), was found to be more stable by −4.39 kcal/mol as compared
to the 4C1 conformation. The
preference of bulkier C6 hydroxy methylene group toward the equatorial
orientation (that avoids 1,3-diaxial steric interactions) might be
contributing in stability of 1C4 conformation by lowering its energy. However, the optimized geometry
of N-butyl derivative 4c was adopted 4C1 conformation, which is more
stable by −6.90 kcal/mol over its 1C4 (Figure d). The preference of 4C1 conformation
was supported by strong H-bonding between O7···H–O4,
O4···H–O6, and N3···H–O2
and by weak N3···H–C2, N3···H–C4,
and O2···H–C4 interactions. This leads to axial
orientation of hydroxy methylene group, which is stabilized by the
O4···H–O6 interaction in 4c.
Biological Activities
Glycosidase Inhibitory Activity
The newly synthesized
spiro-iminosugars (1, 2, 3a–g, and 4a–g) were evaluated for their inhibitory activity against a number of
commercially available glycosidases, such as α-n class="Chemical">glucosidase (rice)
[E.C.3.2.1.20], β-glucosidase (rice) [E.C.3.2.1.21], α-galactosidase
(bovine liver) [E.C.3.2.1.22], β-galactosidase (bovine liver,
cytosolic) [E.C.3.2.1.23], and α-mannosidase (Jack beans) [E.C.3.2.1.24],
with reference to known standards, namely, miglitol (N-hydroxyethyl 1-deoxynojirimycin, trade name Glycet) and 1-deoxynojirimycin
(DNJ). The corresponding IC50 values and inhibition constants
(Ki) were determined from Lineweaver–Burk
plots (Figures S55–S59), and the
results are summarized in Table . The six-membered (piperidine) and seven-membered
(azepine) iminosugars are known to be α-glucosidase inhibitors
among various glycosidases, and the same trend was noticed with 1, 2, 3a–g,
and 4a–g that showed good to potent
inhibition of α-glucosidase. In addition, compounds 1, 2, 3a–g, and 4a–g were found to be selective inhibitors
of α-glucosidase (Table ), wherein the spiro-iminosugar 2 (IC50 = 0.159 and Ki = 0.129 μM) was
found to be a weak inhibitor of α-glucosidase, whereas 4a (IC50 = 0.036 and Ki = 0.033 μM) was found to a better inhibitor of α-glucosidase
than miglitol (IC50 = 0.1 and Ki = 0.081 μM). This fact could be attributed to the synergetic
effect of two pharmacophores, namely, iminosugar and 1,2,3-triazole
(known to be α-glucosidase inhibitor).[29]
Table 1
IC50 and Ki (in μM) Values for Synthesized Compounds and Standards
Miglitol and DNJ
compound
α-glucosidase (rice)
β-glucosidase (rice)
α-galactosidase (bovine)
β-galactosidase (bovine)
α-mannosidase (Jack bean)
miglitol
IC50
0.100
342
NI
NI
NI
Ki
0.081
320
NI
NI
NI
DNJ
IC50
0.05
327
890
NI
NI
Ki
0.012
450
1030
NI
NI
1
IC50
0.069
336
695
NI
NI
Ki
0.012
628
896
NI
NI
2
IC50
0.159
428
993
NI
NI
Ki
0.129
456
932
NI
NI
3a
IC50
0.075
285
632
NI
NI
Ki
0.098
240
1300
NI
NI
3b
IC50
0.032
84
84
81
79
Ki
0.025
14
14
23
80
3c
IC50
0.033
89
73
81
66
Ki
0.028
59
58
33
90
3d
IC50
0.035
251
84
113
73
Ki
0.028
152
68
134
43
3e
IC50
0.037
286
86
73
91
Ki
0.022
191
75
68
56
3f
IC50
0.038
291
12
64
98
Ki
0.031
93
04
38
61
3g
IC50
0.049
286
88
86
101
Ki
0.042
135
71
38
95
4a
IC50
0.036
120
578
NI
NI
Ki
0.033
798
1650
NI
NI
4b
IC50
0.030
295
93
191
63
Ki
0.024
214
82
69
33
4c
IC50
0.032
298
86
58
74
Ki
0.025
171
58
39
65
4d
IC50
0.032
287
87
96
78
Ki
0.027
215
55
84
58
4e
IC50
0.032
241
82
89
91
Ki
0.026
ND
61
79
61
4f
IC50
0.037
>1000
88
74
86
Ki
0.024
ND
67
52
58
4g
IC50
0.034
>1000
87
76
68
Ki
0.019
ND
54
54
69
From Table , it
is evident that the α-glucosidase inhibitory activity of N-n class="Chemical">alkylated
iminosugars 3b–g and 4b–g was significantly improved as compared to
their parent compounds 3a and 4a, respectively.
At the same time, N-alkylated compounds 3b–g/4b–g were found to inhibit
other enzymes in a micromolar range (Table ) and suggest fall in selectivity of enzyme
inhibition for them in contrast to 3a and 4a, respectively. Elongation of alkyl chain from ethyl to dodecyl,
however, showed decrease in α-glucosidase inhibition with each
higher homologue of alkyl chain.
Antifungal Activity
The use of 1,2,3-triazole moiety
in advanced antifungal drug designing provided a platform to synthesize
new antifungal agents containing n class="Chemical">1,2,3-triazole pharmacophore.[30] In view of this, we have investigated the spiro-iminosugars 1, 2, 3a–g,
and 4a–g for their antifungal activities
against C. albicans in comparison to
a well-known marketed antifungal drug, namely, amphotericine b, recommended
for infection of C. albicans (Table ). The MIC value of 3a (0.85 μg/mL) is found to be less than that of amphotericine
b (1.25 μg/mL), whereas the value of 4a (0.025
μg/mL) was found to be ∼50 times higher active than that
of amphotericine b. Compounds 1 (2.5 μg/mL) and 2 (1.25 μg/mL) are, respectively, either weak or comparatively
active with the marketed drug.
Table 2
Antifungal Activities
of 1, 2, 3a–g, and 4a–ga
compound
MIC
compound
MIC
compound
MIC
amphotericin b
1.25
1
2.5
2
1.25
3a
0.85
3b
>1.25
3c
>2.5
3d
>2.5
3e
>2.5
3f
>1.25
3g
1.25
4a
0.025
4b
>1.25
4c
0.025
4d
0.020
4e
>1.25
4f
>1.25
4g
>1.25
Minimum inhibition
concentration
(MIC) values in μg/mL.
Minimum inhibition
concentn class="Species">ration
(MIC) values in μg/mL.
Among N-alkylated derivatives, compound 4c (MIC =
0.025 μg/mL) was found to be comparably active to parent molecule 4a, whereas compound 4d (MIC = 0.020 μg/mL)
showed higher activity than 4a. The MIC values of compounds 3b–g (Table ) are higher than those of amphotericine
b (1.25 μg/mL), whereas for 4b–g, various MIC values are found. Compounds 4b and 4e–g (MIC > 1.25 μg/mL) are weakly
or less active than 4a. Thus, all other N-n class="Chemical">alkyl derivatives
(except 4b and 4c) were found to be less
antifungal than their parent compounds. The confocal images of all
screened compounds showed aggregation of the molecules at the fungal
cell surface and exhibited cell wall disruption (Figure ).
Figure 5
Confocal images of compounds 1, 2, 3a–g,
and 4a–g with yeast cell. The red
arrows show site of cell wall disruption.
Confocal images of compounds 1, 2, 3a–g,
and 4a–g with yeast cell. The red
arrows show site of cell wall disruption.
Molecular Docking Studies
Glycosidases and Ligand
Interactions
The observed biological
activities were supported by molecular docking studies. Thus, molecular
interaction of inhibitor molecules with rice α-n class="Chemical">glucosidase was
analyzed by docking studies. Binding scores of synthesized spiro-iminosugars
(1, 2, 3a–g, and 4a–g) are illustrated in Table S3 and binding poses on the active site
of α-glucosidase (rice) enzyme are shown in Figure . Corroboration of binding
free energies with the inhibition kinetic studies indicated that among
synthesized compounds, molecules 1, 2, 3a, and 4a are potent competitive inhibitors
of rice α-glucosidase. All screened molecules with their respective
conformations (1C4 or 4C1 for piperidineiminosugars)
form favorable contacts with binding pocket of α-glucosidase.
Analysis of polar contacts and other weak interactions (electrostatic
and π-interaction) of these compounds showed that the higher
binding affinity is presumably attributed to the formation of higher
number of stable intermolecular hydrogen bonds between the reactive
group of compounds and ASP204, ILE205, SER469, ARG473, ASN477, and
LYS478 at the binding site of the enzyme (Figure ). However, several π-alkyl interactions
observed between ligand aromatic ring and interacting residues of
enzyme assist polar interaction. In case of N-alkyl derivatives 3b–g and 4b–g, it has been observed that binding of these ligands with
enzyme was unfavorable as compared to the parental compounds (Table S3). This suggests that addition of N-alkyl
chain to 3a and 4a reduces the number of
interactions with binding site residues. As a result, changes in functional
group lead to differential interactions with binding pocket of enzyme.
Minute deviation in biological activity with respect to molecular
docking observations might be due to variations in ligand conformation,
in vitro assay condition, solvation of ligand, and ligand charge state.
Figure 6
Docking
images and binding energies (B.E.) of iminosugars with
α-glucosidase (rice).
Docking
images and binding energies (B.E.) of iminosugars with
α-n class="Chemical">glucosidase (rice).
Molecular Docking Studies for Antifungal Activity
Antifungal
potential of spiro-iminosugars (1, 2, 3a, 4a, 4c, and 4d)
was analyzed using a docking simulation in relation with amphotericine
b as a positive control. The positive binding energy (10.5 kcal/mol)
for n class="Chemical">amphotericine b suggests that its interaction with ergosterol
is predominated by unfavorable interaction over favorable contacts
(Figure ). Analogously,
we have predicted binding of spiro-iminosugars with ergosterol, a
component of fungal cell membranes, which might result in the disruption
of the fungal cell wall and lead to fungal cell death. Compounds 1, 2, and 3a showed approximately
equal binding energies (−1.9, −1.8, and −1.8
kcal/mol) with ergosterol, whereas the highest binding energy of −2.2
kcal/mol was noticed for compound 4a. All compounds exhibited
π-alkyl interaction as shown in Figure . The N-alkylated derivatives 4c (B.E. −2.4 kcal/mol) and 4d (B.E. −2.6
kcal/mol) (Figure ) exhibit strong binding with ergosterol as compared to their parent
compound 4a. This increase in binding energy in derivatives 4c and 4d than their parent iminosugar 4a is in agreement with the in vitro antifungal data (Table ).
Figure 7
Docking of 1, 2, 3a, 4a, 4c, and 4d with ergosterol component
of cell wall of C. albicans (binding
energy (B.E.) is in kcal/mol).
Docking of 1, 2, 3a, 4a, 4c, and 4d with ergosterol component
of cell wall of n class="Species">C. albicans (binding
energy (B.E.) is in kcal/mol).
Conclusions
In conclusion, the AAC
reaction of 3-O-propargyl-3-azido-d-glucofuranose
derivative (IXd) gave adduct 5 that was
used as a common intermediate, by judicious n class="Species">manipulation
of the 1,2- and 5,6-O-isopropylidene groups, in the
synthesis of library of spiro-iminosugars (1, 2, 3a–g, and 4a–g) linked with the 1,2,3-triazole-fused
morpholine. The presence of two pharmacophores, such as iminosugar
and triazole, showed dual biological activity. In addition, the synergetic
effect of two pharmacophores led to augmentation of the glycosidase
inhibitory as well as antifungal activity. Among 16 examples, the
spiro-iminosugars 3a and 4a were found to
be more potent inhibitors of α-glucosidase than miglitol as
well as showed high antifungal activity against C.
albicans than amphotericin b. The N-alkyl derivatives
showed increase of α-glucosidase inhibition and enhancement
of antifungal activity as compared to their respective parent iminosugar.
Thus, the synthesized spiro-iminosugars may open a new era of potential
chimeric drugs in comorbidity treatments.
Experimental Section
General
Methods for Synthesis
Melting points were recorded
using Thomas–Hoover melting point apparatus and are uncorrected.
IR sn class="Chemical">pectra were recorded with an FTIR spectroscope as a thin film
or using KBr pellets and are expressed in cm–1. 1H NMR (300, 400, or 500 MHz) and 13C NMR (100 or
125 MHz) spectra were recorded using CDCl3, CD3OD, or D2O as solvent(s). Chemical shifts were reported
in δ unit (parts per million) with reference to TMS as an internal
standard, and coupling constant (J) values were given
in Hertz. Optical rotations were measured using a polarimeter at 22
°C. High-resolution mass spectra (HRMS) were obtained in positive-ion
electrospray ionization (ESI) mode using time-of-flight analyzer.
Thin-layer chromatography was performed on precoated plates (0.25
mm, silica gel 60 F254). Column chromatography was carried out with
silica gel (100–200 mesh). Reactions were carried out in oven-dried
glassware under dry N2 atmosphere. Methanol, dichloromethane,
and THF were purified and dried according to reported methods. Petroleum
ether (PE) was a distillation fraction between 40 and 60 °C.
The 10% Pd/C was purchased from Aldrich. After neutralization, workup
involves washing of combined organic layer with water and brine, drying
over anhydrous sodium sulfate, and evaporating the solvent under reduced
pressure, followed by vacuum drying.
Synthesis of 6
Compound 5 (2.5 g, 7.07 mmol) was dissolved
in 60% aq AcOH (15 mL) and heated
at 60 °C for 3 h. RM was directly concentrated in a rotary evaporator
under vacuum, and the thick residue obtained was dissolved in ethyl
acetate (EtOAc) and washed with saturated aq NaHCO3 and
distilled water. The organic layer was evaporated to dryness to give
a thick syrup. Column purification of the syrup was done with eluting
of a 7:3 mixture of ethyl acetate and petroleum ether to ease the
synthesis of 6 (2.04 g, 92%) as a solid. R = 0.15, EtOAc; mp = 66–68 °C;
[α]D22 = −21.7 (c 0.108, methanol); IR (KBr, ν, cm–1) 3433,
2987, 2937, 1639, 1554, 1458, 1379, 1091, 869, 732; 1H
NMR (300 MHz, CDCl3) δ 7.56 (s, 1H), 6.26 (d, J = 3.6 Hz, 1H), 4.98 (ABq, J = 15.1 Hz, 2H), 4.65 (d, J = 3.6 Hz, 1H), 4.39
(ABq, J = 12.6 Hz, 2H), 4.28 (d, J = 8.8 Hz, 1H), 3.74 (dd, J = 11.6, 3.2
Hz, 1H), 3.64 (dd, J = 11.6, 5.1 Hz, 1H), 3.12 (ddd, J = 8.8, 5.1, 3.2 Hz, 1H), 1.60 (s, 3H), 1.35 (s, 3H); 13C NMR (125 MHz, CDCl3) δ 131.6, 128.3, 113.5,
105.7, 85.2, 81.1, 69.9, 68.9, 65.9, 64.1, 62.7, 26.9, 26.5; HRMS
calculated for C13H19N3O6Na [M + Na]+ 336.1169, Found: 336.1167.
Synthesis
of 7
Compound 6 (0.800 g, 2.55
mmol) was dissolved in dry DCM (10 mL), to which
n class="Chemical">Bu2SnO (0.063 g, 10% mol) was added and stirred for 10
min, followed by pinchwise addition of TsCl (0.535 g, 2.81 mmol) and
dropwise addition of TEA (1.07 mL, 7.66 mmol). Reactions were maintained
at RT for 1 h and then quenched by 1 M aqHCl solution and extracted
by dichloromethane (2 × 10 mL). The dichloromethane layer was
concentrated, and the obtained thick residue was purified by column
chromatography using EtOAc/PE (3:2) as mobile phase 7 (1.16 g, 97%) observed as a white solid. R = 0.56, EtOAc/PE (4:1); mp = 86–88
°C; [α]D22 = −23.2 (c 0.102, methanol); IR (KBr, ν, cm–1) 3433, 2985, 2933, 1597, 1494, 1452, 1357, 1176, 1095, 985, 819,
667, 553; 1H NMR (500 MHz, CDCl3) δ 7.75
(d, J = 8.1 Hz, 2H), 7.53 (s, 1H), 7.33 (d, J = 8.1 Hz, 2H), 6.16 (d, J = 3.5 Hz, 1H),
4.94 (s, 2H), 4.56 (d, J = 3.5 Hz, 1H), 4.38 (ABq, J = 12.6 Hz, 2H), 4.22 (d, J = 8.9 Hz, 1H), 4.15 (dd, J = 10.4, 2.4 Hz, 1H),
4.06 (dd, J = 10.4, 5.8 Hz, 1H), 3.42 (ddd, J = 10.4. 5.8, 2.4 Hz, 1H), 2.44 (s, 3H), 1.57 (s, 3H),
1.34 (s, 3H). 13C NMR (125 MHz, CDCl3) δ
145.0, 132.4, 131.5, 129.9 (2C), 128.4, 128.0 (2C), 113.7, 105.8,
85.2, 80.4, 71.8, 69.7, 67.0, 65.9, 62.7, 27.1, 26.5, 21.7; HRMS calculated
for C20H25N3O8SNa [M +
Na]+ 490.1255, Found: 490.1254.
Synthesis of 8
Under N2 atmosphere,
into a mixture of 7 (1.0 g, 2.14 mmol), n class="Chemical">NaN3 (0.166 g, 2.57 mmol), and TABI (0.079 g, 10% mol), dry DMF (10 mL)
was added and heated to 95 °C for 3 h. RM was concentrated directly,
water (5 mL) was added, and extraction was carried out by EtOAc (2
× 10 mL). A thick residue was obtained, which was further purified
by EtOAc/PE (3:2) as mobile phase for column chromatography. A white
solid 8 was observed (0.644 g, 89%). R = 0.65, EtOAc/PE (4:1); mp = 151–153
°C; [α]D22 = −32.0 (c 0.104, methanol); IR (KBr, ν, cm–1) 3400, 2989, 2935, 2104, 1664, 1440, 1381, 1220, 1093, 929, 869,
771, 553; 1H NMR (500 MHz, CDCl3) δ 7.53
(s, 1H), 6.23 (d, J = 3.5 Hz, 1H), 5.03 (d, J = 15.2 Hz, 1H), 4.93 (d, J = 15.2 Hz,
1H), 4.65 (d, J = 3.5 Hz, 1H), 4.43 (d, J = 12.7 Hz, 1H), 4.33 (d, J = 12.7 Hz, 1H), 4.29
(d, J = 8.5 Hz, 1H), 3.46 (dd, J = 10.5, 3.2 Hz, 1H), 3.42 (dd, J = 10.5, 5.2 Hz,
1H) 3.17 (ddd, J = 8.5, 5.2, 3.2 Hz, 1H), 1.60 (s,
3H), 1.35 (s, 3H). 13C NMR (125 MHz, CDCl3)
δ 131.0, 128.4, 113.8, 105.6, 85.4, 82.1, 69.6, 68.0, 66.4,
62.8, 54.0, 27.0, 26.5; HRMS calculated for C13H18N6O5Na [M + Na]+ 361.1231, Found:
361.1237.
Synthesis of 1
To compound 8 (200 mg, 0.591 mmol), 75% aq TFA (5 mL, precooled to 0 °C)
was added and stirred for 3 h. After concentn class="Species">ration under vacuum, saturated
aq NaHCO3 (5 mL) was added and extracted with EtOAc (2
× 5 mL). The organic layer was filtered through a 60–120
mesh silica bed with eluting EtOAc. A thick residue was observed on
concentration, which was directly dissolved in distilled methanol
(5 mL) and hydrogenated using 10% Pd/C (catalytic) at RT and 80 psi
pressure of H2 for 24 h and filtered through a celite bed. MeOH was concentrated and purified by column chromatography to obtain
a syrup with MeOH/CHCl3 (1:4) as mobile phase. Amorphous
solid (0.107 g, 71% over two steps) of 1 was observed. R = 0.50, MeOH/CHCl3 (1:4); mp = 235 °C (dec.); [α]D22 = −42.8 (c 0.101, methanol); IR (KBr, ν,
cm–1); 2968, 2106, 1639, 1450, 1377, 1217, 1166,
1095, 916, 868, 748, 700; 1H NMR (500 MHz, D2O) δ 7.60 (s, 1H), 4.93 (ABq, J = 15.8 Hz, 2H), 4.52 (ddd, J = 8.1, 3.4, 1.7 Hz,
1H), 4.47 (dd, J = 8.1, 2.4 Hz, 1H), 4.47 (d, J = 8.1, 2.5 Hz, 1H), 4.43 (d, J = 1.7
Hz, 1H), 4.39 (d, J = 12.8 Hz, 1H), 4.32 (d, J = 12.8 Hz, 1H), 3.70 (dd, J = 14.2, 2.5
Hz, 1H), 3.52–3.38 (m, 3H); 13C NMR (125 MHz, D2O) δ 133.2, 128.8, 75.1, 68.6, 67.1, 66.3, 65.9, 62.0,
46.5, 45.7; HRMS calculated for C10H17N4O4 [M + H]+ 257.1249, Found: 257.1255.
Synthesis of 9
Compound 8 (0.300
g, 0.886 mmol) in THF (5 mL) was added dropwise to a precooled
(0 °C) susn class="Chemical">pension of NaH (0.042 g, 1.06 mmol) in THF (5 mL),
followed by drowise addition of BnBr (0.120 mL, 0.975 mmol). The reaction
was maintained initially at 0 °C for 30 min and then at RT for
2.5 h. The reaction was quenched with saturated aq ammonium chloride,
extracted with EtOAc (2 × 5 mL), and concentrated in vacuo at
reduced pressure, which gave a thick residue. Purification of this
residue was done by column chromatography using EtOAc/PE (2:3) as
mobile phase. A white solid 9 (0.284 g, 75%) was observed. R = 0.40 EtOAc/PE (2:3); mp
= 108–110 °C; [α]D22 = −80.6
(c 0.105, methanol); IR (KBr, ν, cm–1); 2968, 2935, 2106, 1550, 1450, 1494, 1095, 1018, 868, 748; 1H NMR (500 MHz, CDCl3) δ 7.55 (s, 1H), 7.35–7.29
(m, 3H), 7.07 (dd, J = 6.3, 2.9 Hz, 2H), 6.21 (d, J = 3.4 Hz, 1H), 4.83 (d, J = 14.8 Hz,
1H), 4.57 (d, J = 12.1 Hz, 1H), 4.45 (d, J = 10.8 Hz, 1H), 4.42 (d, J = 3.4 Hz,
1H), 4.38 (d, J = 8.9 Hz, 1H), 4.12 (d, J = 14.8 Hz, 1H), 4.05 (d, J = 12.1 Hz, 1H), 3.85
(dt, J = 8.9, 2.8 Hz, 1H), 3.73 (dd, J = 13.5, 2.8 Hz, 1H), 3.58 (d, J = 10.8 Hz, 1H),
3.50 (dd, J = 13.5, 2.8 Hz, 1H), 1.62 (s, 3H), 1.37
(s, 3H); 13C NMR (125 MHz, CDCl3) δ 136.6,
132.0, 128.6(2C), 128.5, 128.2, 128.0(2C), 113.8, 105.9, 85.4, 77.8,
71.9, 70.0, 65.6, 62.4, 50.4, 27.4, 26.8; HRMS calculated for C20H24N6O5Na [M + Na]+ 451.1705, Found: 451.1711.
Synthesis of 2
Compound 9 (0.200 g, 0.591 mmol) was dissolved
in 75% aq TFA (5 mL, precooled
to 0 °C), stirred for 3 h, and concentrated under vacuum. EtOAc
(5 mL) was added and organic layer was washed with saturated aq NaHCO3. The EtOAc layer was filtered through a 60–120 mesh
silica bed with eluting more EtOAc and concentrated. The thick residue
obtained was directly dissolved in acetone/water (8:2, 15 mL) and
cooled to 0 °C. NaIO4 (0.573 g, 2.68 mmol) was pinchwise
added to this mixture over 30 min, and the reaction was maintained
at 0 °C for 1 h and then at RT for another 1 h. The reaction
was quenched by cooling to 0 °C and adding ethylene glycol and
then concentrated on a rotary evaporator. Water was added and extracted
twice by EtOAc (6 × 5 mL each). A concentrated and thick residue
obtained was directly dissolved in MeOH (5 mL) and hydrogenated using
10% Pd/C (catalytic) and stirred at 120 psi pressure for 30 h. RM
was filtered through celite, concentrated, and purified by MeOH/CHCl3 (1:4) as mobile phase. Compound 2 was obtained
as a white solid (0.071 g, 68% over two steps). R = 0.54, MeOH/CHCl3 (1:4);
mp = 185–187 °C; [α]D22 =
−78.5 (c 0.101, methanol); IR (KBr, ν,
cm–1); 3308, 2928, 1674, 1450, 1246, 1093, 833,
758; 1H NMR (500 MHz, D2O, 72 °C) δ
7.67 (s, 1H), 5.08 (d, J = 15.0 Hz, 1H), 4.90 (d, J = 15.0 Hz, 1H), 4.72 (d, J = 3.2 Hz,
1H), 4.53 (d, J = 13.0 Hz, 1H), 4.20 (bs, 1H), 4.19
(d, J = 13.0 Hz, 1H), 3.32 (d, J = 13.8 Hz, 1H), 3.10 (dd, J = 14.4, 1.5 Hz, 1H)
2.97 (dd, J = 14.4, 2.0 Hz, 1H), 2.93 (d, J = 13.8 Hz, 1H); 13C NMR (125 MHz, D2O) δ 133.5, 128.7, 71.3, 68.1, 64.8, 63.4, 61.8, 50.0, 48.5;
DEPT-135, down (48.5, 50.0, 61.8, 64.8), up (68.2, 71.3, 128.8); HRMS
calculated for C9H15N4O3 [M + H]+ 227.1144, Found: 227.1142.
Synthesis
of 10
Acetone/n class="Chemical">water (8:2, 15
mL) was added to 6 (0.700 g, 2.23 mmol) and cooled to
0 °C. NaIO4 (0.573 g, 2.68 mmol) was added pinchwise
to this mixture over 30 min and stirred at 0 °C for 1 h and then
at RT for another 1 h. RM was cooled to 0 °C and ethylene glycol
was added to quench the reaction and then RM was concentrated on a
rotary evaporator. Water (5 mL) was added and extracted by ethyl acetate
(2 × 10 mL). Concentrated organic layer gave a syrup that was
dissolved in MeOH (10 mL), cooled to 0 °C, and NaBH4 (0.101 g, 2.68 mmol) was added portionwise over a period of 20 min.
The reaction was maintained at 0 °C for another 30 min and then
quenched by saturated aq NH4Cl and extracted by EtOAc (2
× 10 mL). The EtOAc layer was concentrated and purified by column
chromatography EtOAc/PE (1:1) as mobile phase. A white solid 10 was observed (0.556 mg, 88% over two steps). R = 0.26 in ethyl EtOAc; mp = 122–124
°C [α]D22 = +44.3 (c 0.101 methanol); IR (KBr, ν, cm–1); 3232,
3130, 2949, 1545, 1448, 1379, 1242, 1168, 1101, 991, 871, 759; 1H NMR (500 MHz, CDCl3) δ 7.58 (s, 1H), 6.36
(d, J = 3.6 Hz, 1H), 5.09 (d, J =
15.2 Hz, 1H), 4.87 (d, J = 15.2 Hz, 1H), 4.84 (d, J = 3.6 Hz, 1H), 4.53 (t, J = 5.4 Hz, 1H),
4.38 (d, J = 12.7 Hz, 1H), 4.14 (d, J = 12.7 Hz, 1H), 3.38–3.30 (m, 2H), 1.62 (s, 4H), 1.38 (s,
3H); 13C NMR (125 MHz, CDCl3) δ 130.6,
128.3, 113.5, 105.7, 85.3, 83.4, 68.4, 66.9, 62.7, 60.3, 26.8, 26.4;
HRMS calculated for C12H17N3O5Na [M + Na]+ 306.1068, Found: 306.1074.
Synthesis
of 11
Compound 10 (20.500 g, 1.77
mmol) was dissolved in dry dichloromethane (10 mL)
and cooled to 0 °C, to which dry n class="Chemical">pyridine (0.426 mL, 5.30 mmol)
was added dropwise followed by addition of TsCl (0.403 g, 2.12 mmol)
pinchwise over 15 min. The reaction was maintained at 0 °C for
30 min and then at RT for 3 h. The reaction was quenched by 1 M aqHCl solution and extracted using dichloromethane (2 × 10 mL).
The organic layer was concentrated, and the thick residue obtained
was purified by column chromatography as mobile phase. A white solid 11 was observed (0.733 g, 95%). R = 0.50 in EtOAc/PE (2:3); mp = 165–167 °C;
[α]D22 = +14.12 (c 0.103
methanol); IR (KBr, ν, cm–1); 3373, 2991,
2924, 1595, 1492, 1440, 1373, 1178, 1097, 981, 868, 763, 665, 555; 1H NMR (500 MHz, CDCl3) δ 7.66 (d, J = 8.3 Hz, 2H), 7.53 (s, 1H), 7.31 (d, J = 8.3 Hz, 2H), 6.25 (d, J = 3.5 Hz, 1H), 4.96 (d, J = 15.1 Hz, 1H), 4.87 (d, J = 15.1 Hz,
1H), 4.66 (d, J = 3.5 Hz, 1H), 4.56 (t, J = 5.5 Hz, 1H), 4.24 (ABq, J = 12.7 Hz,
1H), 4.00 (dd, J = 10.8, 5.5 Hz, 1H), 3.69 (dd, J = 10.8, 5.5 Hz, 1H), 2.44 (s, 3H), 1.56 (s, 3H), 1.34
(s, 3H); 13C NMR (125 MHz, CDCl3) δ 145.3,
132.2, 131.2, 130.0 (2C), 128.5, 128.0 (2C), 113.8, 106.1, 85.0, 79.9,
68.7, 67.0, 66.2, 62.6, 27.0, 26.5, 21.7; HRMS calculated for C19H24N3O7S [M + H]+ 438.1335, Found: 438.1338.
Synthesis of 12
To a mixture of 11 (0.600 g, 1.37 mmol), NaN3 (0.107 g, 1.65 mmol),
and TBAI (0.051 g, 10% mol) dry n class="Chemical">DMF (10 mL) was added under N2 environment and heated at 95 °C for 6 h. The mixture
was concentrated directly on a rotary evaporator, added with water
(5 mL), extracted by EtOAc (2 × 10 mL), concentrated, and purified
by EtOAc/PE (1:1) as mobile phase using column chromatography. A white
solid 12 was observed (0.363 g, 86%). R = 0.55, EtOAc/PE (1:1); mp = 191–193
°C; IR [α]D22 = +70.5 (c 0.104 methanol); IR (KBr, ν, cm–1); 2991,
2941, 2094, 1654, 1546, 1448, 1379, 1230, 1166, 1107, 991, 854, 763,
665, 549; 1H NMR (500 MHz, CDCl3) δ 7.58
(s, 1H), 6.37 (d, J = 3.6 Hz, 1H), 5.03 (d, J = 15.2 Hz, 1H), 4.84 (d, J = 15.2 Hz,
1H), 4.78 (d, J = 3.6 Hz, 1H), 4.53 (dd, J = 7.7, 3.8 Hz, 1H), 4.31 (d, J = 12.8
Hz, 1H), 4.15 (d, J = 12.8 Hz, 1H), 3.25 (dd, J = 13.0, 3.8 Hz, 1H), 2.84 (dd, J = 13.0,
7.7 Hz, 1H), 1.61 (s, 3H), 1.37 (s, 3H); 13C NMR (125 MHz,
CDCl3) δ 130.9, 128.5, 113.7, 106.1, 85.2, 82.3,
68.6, 66.9, 62.7, 50.3, 27.1, 26.5; HRMS calculated for C12H16N6O4Na [M + Na]+ 331.1130,
Found: 331.1138.
Synthesis of 3a
Compound 12 (0.300 g, 0.591 mmol) was dissolved in 75% aq TFA/n class="Chemical">H2O
(5 mL, precooled to 0 °C), stirred at RT for 3 h, concentrated
on a rotary evaporator under vaccum followed by EtOAc addition, and
the organic layer was washed with 10% aq NaHCO3 solution.
Finally, the organic layer was filtered through a 60–120 mesh
silica bed with eluting EtOAc and concentrated to obtain a thick residue.
The thick residue was directly dissolved in methanol (5 mL), hydrogenated
using 10% Pd/C (catalytic), and stirred at 100 psi pressure for 30
h. The reaction mass was filtered through celite, concentrated, and
purified by MeOH/CHCl3 (1:4) as mobile phase. A white solid 3a (0.189 g, 86% over two steps) was observed. R = 0.45 MeOH/CHCl3 (1:4);
mp = 229–231 °C (dec.); IR (KBr, ν, cm–1) 3311, 3117, 2960, 2893, 1688, 1599, 1450, 1247, 1111, 1066, 999,
858, 761, 596; 1H NMR (500 MHz, D2O) δ
7.71 (s, 1H), 4.93 (s, 2H), 4.48 (dd, J = 10.8, 4.8
Hz, 1H), 4.43 (s, 2H), 3.29 (dd, J = 13.4, 4.8 Hz,
2H), 2.84 (dd, J = 13.4, 10.8 Hz, 2H); 13C NMR (125 MHz, D2O) δ 135.1, 128.9, 70.9(2C), 65.6,
61.9, 61.5, 46.0(2C); HRMS calculated for C9H15N4O3 [M + H]+ 227.1139, Found: 227.1145.
Synthesis of 13
Dry dichloromethane (10
mL) and 6 (0.500 g, 1.60 mmol) were mixed together and
cooled to 0 °C, to which n class="Chemical">imidazole (0.239 g, 3.51 mmol) and TBDMSCl
(0.264 g, 1.76 mmol) were added and the reaction was maintained at
RT for 2 h. The reaction was quenched by 1 M aqHCl solution and extracted
by dichloromethane (4 × 10 mL); organic layers were mixed and
concentrated, followed by purification of the obtained thick syrup
by column chromatography using EtOAc/PE (1:4) as mobile phase to obtain
a colorless thick syrup 13 (0.648 g, 95%). R = 0.60, EtOAc; [α]D22 = −21.2 (c 0.101, methanol);
IR (KBr, ν, cm–1); 3462, 2929, 1464, 1379,
1249, 1165, 1095, 1006, 837, 777, 669; 1H NMR (500 MHz,
CDCl3) δ 7.56 (s, 1H), 6.22 (d, J = 3.5 Hz, 1H), 5.00 (d, J = 14.7 Hz, 16H), 4.85
(d, J = 14.7 Hz, 1H), 4.54 (d, J = 12.3 Hz, 1H), 4.51 (d, J = 3.5 Hz, 1H), 4.34
(d, J = 12.3 Hz, 1H), 4.14 (d, J = 9.0 Hz, 1H), 3.77 (dd, J = 10.2, 3.1 Hz, 1H),
3.72 (dd, J = 10.2, 5.1 Hz, 1H), 3.51–3.44
(m, 1H, after D2O ex., it appears as ddd J = 9.0, 5.1, 3.1 Hz), 2.68 (d, J = 4.8 Hz, 1H, ex.
with D2O), 1.58 (s, 3H), 1.35 (s, 3H), 0.88 (s, 9H), 0.07
(s, 3H), 0.06 (s, 3H); 13C NMR (125 MHz, CDCl3) δ 131.9, 128.4, 113.4, 105.9, 85.3, 79.7, 70.1, 68.9, 65.4,
64.3, 62.7, 27.1, 26.6, 25.9 (3C), 18.3, −5.40, −5.45;
HRMS calculated for C19H33N3O6SiNa [M + Na]+ 450.2021, Found: 450.2022.
Synthesis
of 14
Compound 13 (0.600 g, 1.40
mmol) was dissolved in dry dichloromethane (10 mL)
and cooled to 0 °C, to which dry n class="Chemical">pyridine (0.283 mL, 3.51 mmol)
was added slowly, followed by addition of triflic anhydride (0.259
mL, 1.54 mmol, diluted in 2 mL DCM) dropwise over 10 min and catalytic
DMAP. The reaction was maintained at 0 °C for 1 h, quenched by
1 M aqHCl solution, and extracted twice with 5 mL of dichloromethane
each time and concentrated. A thick syrup (0.810 g) was obtained,
to which, without purification, NaN3 (0.129 g, 2.00 mmol,
considering 95% yield of OTf intermediate) and dry DMF (5 mL) were
added. The reaction mass was heated to 65 °C for 1 h, concentrated
directly on a rotary evaporator, water (5 mL) was added, extracted
with ethyl acetate (2 × 5 mL), and evaporated. The obtained thick
syrup was purified by column chromatography using EtOAc/PE (1:4) as
mobile phase, and an off-white solid 14 (0.584 g, 92%
over two steps) was obtained. R = 0.37 in EtOAc/PE (1:1); mp = 119–121 °C; [α]D22 = +50.5 (c 0.103 methanol);
IR (KBr, ν, cm–1); 2987, 2933, 2858, 2112,
1643, 1464, 1379, 1249, 1170, 1095, 1037, 837, 775; 1H
NMR (500 MHz, CDCl3) δ 7.60 (s, 1H), 6.43 (d, J = 3.6 Hz, 1H), 5.14 (d, J = 15.2 Hz,
1H), 4.88 (d, J = 15.2 Hz, 1H), 4.85 (d, J = 3.6 Hz, 1H), 4.57 (d, J = 2.0 Hz, 1H),
4.35 (d, J = 12.7 Hz, 1H), 4.11 (d, J = 12.7 Hz, 1H), 3.83 (dd, J = 10.1, 6.7 Hz, 1H),
3.77 (dd, J = 10.1, 6.7 Hz, 1H), 3.55 (td, J = 6.7, 2.0 Hz, 2H), 1.60 (s, 3H), 1.38 (s, 3H), 0.91 (s,
12H), 0.09 (s, 3H), 0.08 (s, 3H); 13C NMR (125 MHz, CDCl3) δ 130.3, 128.4, 113.3, 105.6, 85.0, 80.5, 67.7, 67.1,
63.2, 62.5, 60.6, 26.8, 26.3, 25.8 (3C), 18.1, −5.51, −5.55;
HRMS calculated for C19H33N6O5Si [M + H]+ 453.2276, Found: 453.2286.
Synthesis
of 4a
TFA (75% n class="Chemical">aq, 5 mL, precooled
to 0 °C) was added to compound 14 (0.500 mg, 1.10
mmol), stirred at 0 °C for 3 h, and concentrated under vacuum
and saturated aq NaHCO3 (5 mL), followed by EtOAC (5 mL)
addition. The reaction was extracted twice with EtOAc (2 × 5
mL) and the separated organic layer was filtered through a 60–120
mesh silica bed with eluting ethyl acetate and concentrated. A thick
residue was obtained, which was directly dissolved in distilled MeOH
(10 mL), hydrogenated using 10% Pd/C (cat.), stirred at 120 psi pressure
for 24 h, filtered through celite, concentrated, and purified by MeOH/CHCl3 (2:3) as mobile phase. Compound 4a was obtained
as a white solid (0.220 g, 78% over two steps). R = 0.35, MeOH/CHCl3 (2:3);
mp = 114–116 °C; [α]D22 =
−27.5 (c 0.102, methanol); IR (KBr, ν,
cm–1); 3308, 2928, 1674, 1450, 1093, 939, 758; 1H NMR (500 MHz, D2O) δ 7.65 (s, 1H), 5.02
(ABq, J = 15.5 Hz, 2H), 4.32 (ABq, J = 12.5 Hz, 2H), 4.11 (d, J =
2.6 Hz, 1H), 4.05 (t, J = 3.3 Hz, 1H), 3.71 (dd, J = 11.0, 6.5 Hz, 1H), 3.68 (dd, J = 11.0,
6.5 Hz, 1H), 3.65–3.62 (m, 1H), 3.60 (dd, J = 14.4, 3.3 Hz, 1H), 3.07 (dd, J = 14.4, 3.3 Hz,
1H); 13C NMR (125 MHz, D2O) δ 133.0, 128.4,
68.2, 68.1, 66.6, 63.3, 62.1, 60.4, 56.0, 46.5; HRMS calculated for
C10H17N4O4 [M + H]+ 257.1249, Found: 257.1255.
General Method for N-Alkylation
Iminosugar 3a/4a (1.0 equiv) was dissolved
in dry n class="Chemical">DMF (0.5 mL), followed
by addition of K2CO3 (2.2 equiv) and alkyl halide
(1.1 equiv). The reaction mass was heated under N2 atmosphere
and concentrated on a rotary evaporator under high vaccum, followed
by column purification using CHCl3 and MeOH system as a
mobile phase on silica gel 100–200 mesh size.
Synthesis
of 3b
The reaction of 3a (0.020
g, 88.40 μmol), K2CO3 (0.027 g, 194.49
μmol), and n class="Chemical">bromoethane (0.007 mL, 97.25 μmol)
in DMF was maintained at 80 °C for 1 h. Usual workup and purification
by column chromatography using CHCl3/MeOH (1:9) as mobile
phase gave 3b (0.021 g, 95%) as a white solid. R = 0.52, CHCl3/MeOH
(1:4); mp = 147–149 °C; 1H NMR (400 MHz, CD3OD) δ 7.47 (s, 1H), 4.72 (s, 2H), 4.44 (dd, J = 11.2, 4.9 Hz, 2H), 4.25 (s, 2H), 2.91 (dd, J = 11.2, 4.9 Hz, 2H), 2.47 (q, J = 7.2 Hz, 2H),
2.09 (t, J = 11.2 Hz, 2H), 1.04 (t, J = 7.2 Hz, 3H); 13C NMR (100 MHz, CD3OD) δ
135.0, 127.4, 71.0 (2C), 65.9, 61.3, 61.2, 55.1 (2C), 51.1, 10.7;
HRMS (ESI) m/z calculated for C11H19N4O3 (M + H)+ 255.1452, Found: 255.1451.
Synthesis of 3c
The reaction of 3a (0.020 g, 88.40 μmol),
K2CO3 (0.027 g, 194.49 μmol), and n class="Chemical">n-bromobutane
(0.010 mL, 97.25 μmol) in DMF was carried out at 80 °C
for 1 h. Usual workup and purification by column chromatography using
CHCl3/MeOH (1:9) as mobile phase gave 3c (0.024
g, 98%) as a white solid. R = 0.55, CHCl3/MeOH (1:4); mp = 156–158 °C; 1H NMR (400 MHz, CD3OD) δ 7.47 (s, 1H), 4.72
(s, 2H), 4.43 (dd, J = 11.2, 4.9 Hz, 2H), 4.25 (s,
2H), 2.90 (dd, J = 11.2, 4.9 Hz, 2H), 2.39 (q, J = 7.2 Hz, 2H), 2.09 (t, J = 11.2 Hz,
2H), 1.49–1.37 (m, 2H), 1.28 (sextate, J =
7.2 Hz, 2H), 0.87 (t, J = 7.2 Hz, 3H); 13C NMR (100 MHz, CD3OD) δ 135.0, 127.3, 71.0 (2C),
65.9, 61.3, 61.2, 57.1, 55.6 (2C), 28.6, 20.2, 12.9; HRMS (ESI) m/z calculated for C13H23N4O3 (M + H)+: 283.1765,
Found: 283.1769.
Synthesis of 3d
The
reaction of 3a (0.020 g, 88.40 μmol), K2CO3 (0.027 g, 194.49 μmol), and n-bromohexane
(0.014 mL, 97.25 μmol) in DMF was carried out at 80 °C
for 1 h. Usual workup and purification by column chromatography using
CHCl3/MeOH (1:9) as mobile phase gave 3d (0.024
g, 89%) as a white solid. R = 0.56, CHCl3/MeOH (1:4); mp = 153–155 °C; 1H NMR (400 MHz, CD3OD) δ 7.47 (s, 1H), 4.72
(s, 2H), 4.43 (dd, J = 11.2, 4.9 Hz, 2H), 4.25 (s,
2H), 2.90 (dd, J = 11.2, 4.9 Hz, 2H), 2.38 (q, J = 7.2 Hz, 2H), 2.09 (t, J = 11.2 Hz,
2H), 1.49–1.37 (m, 2H), 1.30–1.21 (m, 6H), 0.82 (t, J = 7.2 Hz, 3H); 13C NMR (100 MHz, CD3OD) δ 135.0, 127.5, 70.9 (2C), 65.9, 61.3, 61.2, 57.4, 55.5
(2C), 31.5, 26.8, 26.3, 22.3, 13.0; HRMS (ESI) m/z calculated for C15H27N4O3 (M + H)+: 311.2084, Found: 311.2078.
Synthesis
of 3e
The reaction of 3a (0.020
g, 88.40 μmol), K2CO3 (0.027 g, 194.49
μmol), and n class="Chemical">n-bromooctane
(0.017 mL, 97.25 μmol) in DMF was carried out at 80 °C
for 1 h. Usual workup and purification by column chromatography using
CHCl3/MeOH (1:9) as mobile phase gave 3e (0.028
g, 94%) as a white solid. R = 0.58, CHCl3/MeOH (1:4); mp = 141–143 °C; 1H NMR (400 MHz, CD3OD) δ 7.48 (s, 1H), 4.73
(s, 2H), 4.44 (dd, J = 11.5, 4.9 Hz, 2H), 4.26 (s,
2H), 2.91 (dd, J = 11.5, 4.9 Hz, 2H), 2.42–2.36
(m, 2H), 2.10 (t, J = 11.5 Hz, 2H), 1.49–1.41
(m, 2H), 1.30–1.18 (m, 10H), 0.82 (t, J =
7.0 Hz, 3H); 13C NMR (125 MHz, D2O) δ
135.0, 127.4, 71.0 (2C), 65.9, 61.3, 61.2, 57.4, 55.6 (2C), 31.6,
29.2, 29.0, 27.1, 26.4, 22.3, 13.0; HRMS (ESI) m/z calculated for C17H31N4O3 (M + H)+: 339.2391, Found: 339.2390.
Synthesis
of 3f
The reaction of 3a (0.020
g, 88.40 μmol), K2CO3 (0.027 g, 194.49
μmol), and n class="Chemical">n-bromodecane
(0.020 mL, 97.25 μmol) in DMF was carried out at 60 °C
for 1 h. Usual workup and purification by column chromatography using
CHCl3/MeOH (1:9) as mobile phase gave 3f (0.029
g, 92%) as a white solid. R = 0.60, CHCl3/MeOH (1:4); mp = 147–149 °C; 1H NMR (400 MHz, CD3OD) δ 7.47 (s, 1H), 4.72
(s, 2H), 4.43 (dd, J = 11.5, 4.4 Hz, 2H), 4.25 (s,
2H), 2.90 (dd, J = 11.5, 4.4 Hz, 2H), 2.39 (App.
triplet, J = 7.7 Hz, 2H), 2.09 (t, J = 11.5 Hz, 2H), 1.50–1.40 (m, 2H), 1.31–1.12 (m, 14H),
0.81 (t, J = 7.7 Hz, 3H); 13C NMR (125
MHz, D2O) δ 135.0, 127.4, 71.0 (2C), 66.0, 61.3,
61.2, 57.4, 55.6 (2C), 31.7, 29.33, 29.30, 29.2, 29.1, 27.1, 26.4,
22.3, 13.0; HRMS (ESI) m/z calculated
for C19H35N4O3 (M + H)+: 367.2704, Found: 367.2703.
Synthesis of 3g
The reaction of 3a (0.020 g, 88.40 μmol),
K2CO3 (0.027 g, 194.49 μmol), and n class="Chemical">n-bromododecane
(0.023 mL, 97.25 μmol) in DMF was carried out at 60 °C
for 1 h. Usual workup and purification by column chromatography using
CHCl3/MeOH (1:9) as mobile phase gave 3g (0.031
g, 90%) as a white solid. R = 0.66, CHCl3/MeOH (1:4); mp = 214–216 °C; 1H NMR (400 MHz, CD3OD) δ 7.47 (s, 1H), 4.72
(s, 2H), 4.43 (dd, J = 11.2, 4.8 Hz, 2H), 4.25 (s,
2H), 2.90 (dd, J = 11.2, 4.8 Hz, 2H), 2.38 (App.
t, J = 7.7 Hz, 2H), 2.09 (t, J =
11.2 Hz, 2H), 1.50–1.40 (m, 2H), 1.30–1.13 (m, 18H),
0.80 (t, J = 7.7 Hz, 3H); 13C NMR (100
MHz, CD3OD) δ 135.0, 127.3, 71.0 (2C), 66.0, 61.3,
61.2, 57.4, 55.6 (2C), 31.7, 29.4, 29.32, 29.30, 29.2, 29.1, 27.1,
26.4, 22.3, 13.0; HRMS (ESI) m/z calculated for C21H39N4O3 (M + H)+: 395.3017, Found: 395.3017.
Synthesis
of 4b
The reaction of 4a (0.020
g, 78.05 μmol), K2CO3 (0.024 g, 171.70
μmol), and n class="Chemical">bromoethane (0.006 mL, 85.85 μmol)
in DMF was carried out at 60 °C for 2 h. Usual workup and purification
by column chromatography using CHCl3/MeOH (2:3) as mobile
phase gave 4b (0.020 g, 93%) as a thick syrup. R = 0.46, CHCl3/MeOH
(2:3); [α]D22 = +0.5 (c 0.15, methanol); 1H NMR (400 MHz, CD3OD) δ
7.45 (s, 1H), 4.85 (d, J = 15.0 Hz, 1H), 4.74 (d, J = 15.0 Hz, 1H), 4.24 (d, J = 4.7 Hz,
1H), 4.16 (ABq, J = 12.2 Hz, 1H), 4.10
(dd, J = 8.0, 3.6 Hz, 1H), 3.71 (dd, J = 11.0, 6.0 Hz, 1H), 3.67 (dd, J = 11.0, 4.7 Hz,
1H), 3.30 (App. q, J = 4.7 Hz, 1H), 3.21 (dd, J = 12.8, 3.6 Hz, 1H), 2.85–2.71 (m, 3H), 1.06 (t, J = 7.1 Hz, 3H); 13C NMR (100 MHz, CD3OD) δ 133.6, 127.3, 78.1, 70.5, 69.8, 65.5, 64.9, 62.0, 61.7,
58.3, 51.6, 10.2; HRMS (ESI) m/z calculated for C12H21N4O4 (M + H)+: 285.1557, Found: 285.1557.
The reaction of 4a (0.020 g, 78.05 μmol),
K2CO3 (0.024 g, 171.70 μmol), and n class="Chemical">n-bromohexane
(0.012 mL, 85.85 μmol) in DMF was carried out at 60 °C
for 2 h. Usual workup and purification by column chromatography using
CHCl3/MeOH (2:3) as mobile phase gave 4d (0.024
g, 90%) as a thick syrup. R = 0.52, CHCl3/MeOH (2:3); [α]D22 = +1.7 (c 0.15, methanol); 1H NMR (400 MHz, CD3OD) δ 7.45 (s, 1H), 4.84 (d, J = 15.0 Hz, 1H), 4.72 (d, J = 15.0 Hz,
1H), 4.28 (d, J = 4.3 Hz, 1H), 4.18 (d, J = 12.1 Hz, 1H), 4.12 (dd, J = 7.9, 3.7 Hz, 1H),
4.11 (d, J = 12.1 Hz, 1H), 3.69 (dd, J = 11.2, 4.3 Hz, 1H), 3.67 (dd, J = 11.2, 4.3 Hz,
1H), 3.25 (App. q, J = 4.3 Hz, 1H), 3.13 (dd, J = 12.9, 3.7 Hz, 1H), 2.80–2.60 (m, 3H), 1.55–1.42
(m, 2H), 1.32–1.20 (m, 6H), 0.82 (t, J = 6.7
Hz, 3H); 13C NMR (100 MHz, CD3OD) δ 136.0,
129.5, 72.9, 72.2, 67.5, 67.4, 64.9, 63.9, 60.4, 55.9, 54.0, 33.8,
29.0, 28.3, 24.6, 15.3; HRMS (ESI) m/z calculated for C16H29N4O4 (M + H)+: 341.2183, Found: 341.2193.
Synthesis
of 4e
The reaction of 4a (0.020
g, 78.05 μmol), K2CO3 (0.024 g, 171.70
μmol), and n class="Chemical">n-bromooctane
(0.015 mL, 85.85 μmol) in DMF was carried out at 60 °C
for 2 h. Usual workup and purification by column chromatography using
CHCl3/MeOH (2:3) as mobile phase gave 4e (0.026
g, 92%) as a thick syrup. R = 0.53, CHCl3/MeOH (2:3); [α]D22 = +7.5 (c 0.14, methanol); 1H NMR (400 MHz, CD3OD) δ 7.45 (s, 1H), 4.84 (d, J = 15.0 Hz, 1H), 4.73 (d, J = 15.0 Hz,
1H), 4.28 (d, J = 4.9 Hz, 1H), 4.16 (d, J = 12.1 Hz, 1H), 4.13 (dd, J = 8.1, 3.9 Hz, 1H),
4.11 (d, J = 12.1 Hz, 1H), 3.68 (dd, J = 11.3, 6.2 Hz, 1H), 3.66 (dd, J = 11.3, 4.9 Hz,
1H), 3.25 (App. q, J = 4.9 Hz, 1H), 3.13 (dd, J = 12.9, 3.9 Hz, 1H), 2.80–2.60 (m, 3H), 1.58–1.43
(m, 2H), 1.32–1.15 (m, 10H), 0.81 (t, J =
6.8 Hz, 3H); 13C NMR (100 MHz, CD3OD) δ
136.0, 129.5, 72.9, 72.2, 67.5, 67.4, 64.9, 63.9, 60.4, 55.9, 54.0,
33.9, 31.5, 31.6, 31.3, 29.3, 28.3, 24.6, 15.3; HRMS (ESI) m/z calculated for C18H33N4O4 (M + H)+: 369.2496,
Found: 369.2502.
Synthesis of 4f
The
reaction of 4a (0.020 g, 78.05 μmol), K2CO3 (0.024 g, 171.70 μmol), and n class="Chemical">n-bromodecane
(0.018 mL, 85.85 μmol) in DMF was carried out at 60 °C
for 2 h. Usual workup and purification by column chromatography using
CHCl3/MeOH (2:3) as mobile phase gave 4f (0.28
g, 90%) as a thick syrup. R = 0.55, CHCl3/MeOH (2:3); [α]D22 = +6.6 (c 0.16, methanol); 1H NMR (400 MHz, CD3OD) δ 7.45 (s, 1H), 4.84 (d, J = 15.0 Hz, 1H), 4.73 (d, J = 15.0 Hz,
1H), 4.28 (d, J = 4.9 Hz, 1H), 4.18 (d, J = 12.1 Hz, 1H), 4.13 (dd, J = 8.5, 3.9 Hz, 1H),
4.11 (d, J = 12.1 Hz, 1H), 3.70 (dd, J = 11.2, 6.2 Hz, 1H), 3.66 (dd, J = 11.2, 4.9 Hz,
1H), 3.25 (App. q, J = 4.9 Hz, 1H), 3.13 (dd, J = 12.9, 3.9 Hz, 1H), 2.74–2.61 (m, 2H), 2.76 (dd, J = 12.9, 8.5 Hz, 1H), 1.55–1.42 (m, 2H), 1.30–1.12
(m, 14H), 0.80 (t, J = 6.8 Hz, 3H); 13C NMR (100 MHz, CD3OD) δ 136.0, 129.5, 72.9, 72.2,
67.5, 67.4, 64.9, 63.9, 60.4, 55.9, 54.0, 33.9, 31.7, 31.6, 31.55,
31.3, 29.3, 24.6, 15.3; HRMS (ESI) m/z calculated for C20H37N4O4 (M + H)+: 397.2809, Found: 397.2820.
Synthesis
of 4g
The reaction of 4a (0.020
g, 78.05 μmol), K2CO3 (0.024 g, 171.70
μmol), and n class="Chemical">n-bromododecane
(0.021 mL, 85.85 μmol) in DMF was carried out at 60 °C
for 2 h. Usual workup and purification by column chromatography using
CHCl3/MeOH (2:3) as mobile phase gave 4g (0.029
g, 89%) as a thick syrup. R = 0.59, CHCl3/MeOH (2:3); [α]D22 = +18.8 (c 0.10, methanol); 1H NMR (400 MHz, CD3OD) δ 7.45 (s, 1H), 4.84 (d, J = 15.0 Hz, 1H), 4.73 (d, J = 15.0 Hz,
1H), 4.29 (d, J = 4.3 Hz, 1H), 4.18 (d, J = 12.1 Hz, 1H), 4.13 (dd, J = 8.0, 3.9 Hz, 1H),
4.11 (d, J = 12.1 Hz, 1H), 3.70 (dd, J = 11.2, 5.2 Hz, 1H), 3.66 (dd, J = 11.2, 4.9 Hz,
1H), 3.25 (App. q, J = 4.9 Hz, 1H), 3.13 (dd, J = 12.9, 3.9 Hz, 1H), 2.76 (dd, J = 12.9,
8.0 Hz, 1H), 2.74–2.60 (m, 2H), 1.55–1.45 (m, 2H), 1.30–1.13
(m, 18H), 0.80 (t, J = 6.8 Hz, 3H); 13C NMR (100 MHz, CD3OD) δ 133.8, 127.3, 70.6, 70.0,
65.3, 65.1, 62.7, 61.6, 58.2, 53.6, 51.8, 31.7, 29.4, 29.35, 29.3,
29.1, 27.1, 26.0, 22.3, 13.0; HRMS (ESI) m/z calculated for C22H41N4O4 (M + H)+: 425.3122, Found: 425.3135.
Conformational Analysis Protocol for DFT Method
To
investigate conformational preferences of compounds 3a, 3c, 4a, and 4c and to corroborate
our NMR exn class="Chemical">perimental observations, we have performed quantum chemical
calculations using the density functional theory (DFT) method. The
initial geometries (2C5 and 5C2 conformations) for compounds 3a and 3c and (1C4 and 4C1 conformations)
for compounds 4a and 4c have been generated
using molecular modeling Spartan’14 software (wavefunction.in).
Automated complete geometry optimizations were performed using the
DFT method by employing B3LYP/6-31 G** basic set function on Spartan’14
software. Pictorial presentations of DFT-optimized geometries of compounds
have been made using Mercury 3.7 software.
Methodology Used for Biological
Activities
Glycosidase inhibition
assay for compounds 1, 2, 3a–g, and 4a–g was carried out by mixing 0.1 U cm–3 each of α-,β-glucosidase,
α-,β-galactosidase, and α-n class="Species">mannosidase, and the samples
were incubated for 1 h at 37 °C. Enzyme action for α/β-galactosidase
was initiated by addition of 10 mM p-nitrophenyl-α-/β-d-galactopyranoside (pNPG) as a substrate in
200 mM sodium acetate buffer. The reaction was incubated at 37 °C
for 10 min and stopped by adding 2 cm3 of 200 mM borate
buffer of pH 9.8. α-Mannosidase activity was initiated by addition
of 10 mM p-nitrophenyl-α-d-mannopyranoside
as a substrate in 100 mM citrate buffer of pH 4.5. The reaction was
incubated at 37 °C for 10 min and stopped by adding 2 cm3 of 200 mM borate buffer of pH 9.8. Initiation of α-glucosidase
activity was done by addition of 10 mM p-nitrophenyl-α-d-glucopyranoside in 100 mM phosphate buffer of pH 6.8 and stopped
by adding 2 cm3 of 0.1 M Na2CO3 after
an incubation of 10 min at 37 °C. Glycosidase activity was determined
by measuring absorbance of the p-nitrophenol released
from pNPG at 420 nm using Molecular Devices Spectramax
M5 mulitmode plate reader. One unit of glycosidase activity is defined
as the amount of enzyme that hydrolyzed 1 mM of p-nitrophenyl pyranosideper minute under assay condition.
Inhibition
constant (Ki) values were determined by
spectrophotometrically measuring the residual hydrolytic activities
of the glycosidases in the presence of compounds. Each assay was n class="Chemical">performed
in the appropriate buffer at the optimal pH for the enzymes. The reactions
were initiated by addition of enzyme to a solution of the substrate
in the absence or presence of various concentrations of inhibitor.
Approximate values of Ki were determined
using a fixed concentration of substrate (around the KM value for the different glycosidases) and various concentrations
of inhibitor. Full Ki determinations and
enzyme inhibition mode were determined from the slope of Lineweaver–Burk
plots and double reciprocal analysis.
Antifungal Activity
Minimal
Inhibition Concentration (MIC) Assay
Fungal strains Candida albicans NCIM 3557
were procured from National Chemical Lab, Repository. Using the multipin class="Chemical">pette
dispense, 100 μL of LB medium was dispensed in all wells of
microliter plate. The plate and lid were labeled, and 100 μL
of 2× antibiotic solutions was pipette into wells in column 1.
Using the multipipette set at 100 μL, the antibiotics were mixed
into the wells of column 1 by sucking up and down six to seven times.
A volume of 100 μL from column 1 was withdrawn and added to
column 2. This made column 2 a twofold dilution of column 1, column
3 a twofold dilution of column 3, and so on. Similar procedure was
repeated for the test compounds 1, 2, 3a–g, and 4a–g. The plates were incubated at 30 °C for 24 h and scanned
with an ELISA plate reader. All experiments were run in triplicate,
and standard deviations were determined.
Bright-Field Images
Candida albicans
SC5314
strain obtained from MTCC (National Chemical Lab, Pune) was inoculated
in six-well sterile plates. The glass slides were made grease-free
thoroughly. Each compound (5 μL) in its subinhibitory concentn class="Species">ration
was added to each well along with control. Compounds 1, 2, 3a–g, and 4a–g were added and incubated at 37 °C
for 24 h. The cells were treated and fixed using 2% paraformaldehyde.
The glass slides were washed with 1× PBS buffer and imaged using
confocal microscopy.
Methodology Used for Docking Studies
Three dimensional
(3D) models of rice α/β n class="Chemical">glucosidase, rice α/β
galactosidase, and Jack bean α-mannosidase were built by comparative
modeling using MODELER 9 v4.[31] Crystallographic
structures of homologous protein were considered as a template to
predict the structures of enzymes, which were further assessed by
the Ramachandran plot analysis. Structures of enzymes and synthesized
molecules were energy-minimized using GROMOS43B1 energy field. Receptor
and ligand molecules were prepared for docking simulation by adding
hydrogens and assigning Kollman charges. Likewise, the ligands were
established by assigning the Gasteiger charges and nonpolar hydrogens.
Structures of receptor and ligand are converted from pdb to pdbqt
format using AutoDock 4.2.[32] Grid was set
around the active site of enzymes with a dimension of 20 × 20
× 20 Å3 using Autogrid module of Autodock program.
Binding score was calculated by the Lamarckian genetic algorithm (LGA),
which uses a set of 30 structurally known protein–ligand complexes
with experimentally determined binding constants to calibrate empirical
free-energy functions. Parameters were set to the LGA calculation
of 10 000 runs, whereas energy evaluations were set to 1 500 000
and 27 000 generations (repetition of process). The obtained
docked poses and intermolecular interactions were gathered and analyzed
using PyMol visualize (PyMol Molecular Graphics System, version 1.2r3
pre, Schrodinger LLC).
Authors: Sabrina B Ferreira; Ana C R Sodero; Mariana F C Cardoso; Emerson S Lima; Carlos R Kaiser; Floriano P Silva; Vitor F Ferreira Journal: J Med Chem Date: 2010-03-25 Impact factor: 7.446
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