Literature DB >> 30022500

Metagenomics analysis of the virome of 300 concentrates from a Swiss platelet bank.

Francisco Brito1,2, Samuel Cordey3, Eric Delwart4, Xutao Deng4, Diderik Tirefort5, Coralie Lemoine-Chaduc6, Evgeny Zdobnov1,2, Thomas Lecompte5, Laurent Kaiser3, Sophie Waldvogel-Abramowski5,6, Olivier Preynat-Seauve5.   

Abstract

BACKGROUND AND OBJECTIVES: Platelet concentrates are frequently transfused to patients with reduced immunity. An exhaustive description of their viral content is needed to prevent unwanted infection.
MATERIAL AND METHODS: To track viral sequences, a shotgun metagenomics approach was used on a bank of 300 platelets concentrates. Sequences were analysed through the diagnostics-oriented pipeline ezVIR.
RESULTS: We only observed viruses commonly described in healthy individuals.
CONCLUSION: Herein is reported the first viral landscape of a platelet concentrates bank.
© 2018 International Society of Blood Transfusion.

Entities:  

Keywords:  next-generation sequencing; platelet concentrates; transfusion-transmissible infections

Year:  2018        PMID: 30022500      PMCID: PMC6338525          DOI: 10.1111/vox.12695

Source DB:  PubMed          Journal:  Vox Sang        ISSN: 0042-9007            Impact factor:   2.144


  12 in total

1.  Corrigendum: The plasma virome of febrile adult Kenyans shows frequent parvovirus B19 infections and a novel arbovirus (Kadipiro virus).

Authors:  Carolyne N Ngoi; Juliana Siqueira; Linlin Li; Xutao Deng; Peter Mugo; Susan M Graham; Matt A Price; Eduard J Sanders; Eric Delwart
Journal:  J Gen Virol       Date:  2017-03       Impact factor: 3.891

2.  Metagenomics analysis of red blood cell and fresh-frozen plasma units.

Authors:  Pierre Lau; Samuel Cordey; Francisco Brito; Diderik Tirefort; Thomas J Petty; Lara Turin; Arthur Guichebaron; Mylène Docquier; Evgeny M Zdobnov; Sophie Waldvogel-Abramowski; Thomas Lecompte; Laurent Kaiser; Olivier Preynat-Seauve
Journal:  Transfusion       Date:  2017-05-11       Impact factor: 3.157

3.  Failure to confirm XMRV/MLVs in the blood of patients with chronic fatigue syndrome: a multi-laboratory study.

Authors:  Graham Simmons; Simone A Glynn; Anthony L Komaroff; Judy A Mikovits; Leslie H Tobler; John Hackett; Ning Tang; William M Switzer; Walid Heneine; Indira K Hewlett; Jiangqin Zhao; Shyh-Ching Lo; Harvey J Alter; Jeffrey M Linnen; Kui Gao; John M Coffin; Mary F Kearney; Francis W Ruscetti; Max A Pfost; James Bethel; Steven Kleinman; Jerry A Holmberg; Michael P Busch
Journal:  Science       Date:  2011-09-22       Impact factor: 47.728

4.  Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot study.

Authors:  Tom J Petty; Samuel Cordey; Ismael Padioleau; Mylène Docquier; Lara Turin; Olivier Preynat-Seauve; Evgeny M Zdobnov; Laurent Kaiser
Journal:  J Clin Microbiol       Date:  2014-07-09       Impact factor: 5.948

Review 5.  Human anelloviruses: an update of molecular, epidemiological and clinical aspects.

Authors:  Sonia Spandole; Dănuţ Cimponeriu; Lavinia Mariana Berca; Grigore Mihăescu
Journal:  Arch Virol       Date:  2015-02-15       Impact factor: 2.574

6.  Durable sequence stability and bone marrow tropism in a macaque model of human pegivirus infection.

Authors:  Adam L Bailey; Michael Lauck; Mariel Mohns; Eric J Peterson; Kerry Beheler; Kevin G Brunner; Kristin Crosno; Andres Mejia; James Mutschler; Matthew Gehrke; Justin Greene; Adam J Ericsen; Andrea Weiler; Gabrielle Lehrer-Brey; Thomas C Friedrich; Samuel D Sibley; Esper G Kallas; Saverio Capuano; Jeffrey Rogers; Tony L Goldberg; Heather A Simmons; David H O'Connor
Journal:  Sci Transl Med       Date:  2015-09-16       Impact factor: 17.956

7.  Astrovirus MLB2, a New Gastroenteric Virus Associated with Meningitis and Disseminated Infection.

Authors:  Samuel Cordey; Diem-Lan Vu; Manuel Schibler; Arnaud G L'Huillier; Francisco Brito; Mylène Docquier; Klara M Posfay-Barbe; Thomas J Petty; Lara Turin; Evgeny M Zdobnov; Laurent Kaiser
Journal:  Emerg Infect Dis       Date:  2016-05       Impact factor: 6.883

8.  Multiplexed Metagenomic Deep Sequencing To Analyze the Composition of High-Priority Pathogen Reagents.

Authors:  Michael R Wilson; Greg Fedewa; Mark D Stenglein; Judith Olejnik; Linda J Rennick; Sham Nambulli; Friederike Feldmann; W Paul Duprex; John H Connor; Elke Mühlberger; Joseph L DeRisi
Journal:  mSystems       Date:  2016-07-19       Impact factor: 6.496

9.  Quality filtering of Illumina index reads mitigates sample cross-talk.

Authors:  Erik Scott Wright; Kalin Horen Vetsigian
Journal:  BMC Genomics       Date:  2016-11-04       Impact factor: 3.969

10.  The blood DNA virome in 8,000 humans.

Authors:  Ahmed Moustafa; Chao Xie; Ewen Kirkness; William Biggs; Emily Wong; Yaron Turpaz; Kenneth Bloom; Eric Delwart; Karen E Nelson; J Craig Venter; Amalio Telenti
Journal:  PLoS Pathog       Date:  2017-03-22       Impact factor: 6.823

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  4 in total

Review 1.  Viral Metagenomics of Blood Donors and Blood-Derived Products Using Next-Generation Sequencing.

Authors:  Sophie Waldvogel-Abramowski; Sofiane Taleb; Marco Alessandrini; Olivier Preynat-Seauve
Journal:  Transfus Med Hemother       Date:  2019-03-15       Impact factor: 3.747

2.  Plasma virome of 781 Brazilians with unexplained symptoms of arbovirus infection include a novel parvovirus and densovirus.

Authors:  Elizabeth Fahsbender; Antonio Charlys da-Costa; Danielle Elise Gill; Flavio Augusto de Padua Milagres; Rafael Brustulin; Fred Julio Costa Monteiro; Marlisson Octavio da Silva Rego; Edcelha Soares D'Athaide Ribeiro; Ester Cerdeira Sabino; Eric Delwart
Journal:  PLoS One       Date:  2020-03-05       Impact factor: 3.240

3.  Prevalence of DNA of fourteen human polyomaviruses determined in blood donors.

Authors:  Sergio Kamminga; Els van der Meijden; Caroline de Brouwer; Mariet Feltkamp; Hans Zaaijer
Journal:  Transfusion       Date:  2019-10-21       Impact factor: 3.157

4.  ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data.

Authors:  Zachary Deng; Eric Delwart
Journal:  BMC Bioinformatics       Date:  2021-03-12       Impact factor: 3.169

  4 in total

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