| Literature DB >> 30013690 |
Dominic Bernhard1, Fabian Dietrich1, Mariyam Fatima2,3, Cristóbal Pérez2,3, Hannes C Gottschalk4, Axel Wuttke4, Ricardo A Mata4, Martin A Suhm4, Melanie Schnell2,3,5, Markus Gerhards1.
Abstract
The structure of the isolated aggregate of phenyl vinyl ether and methanol is studied by combining a multi-spectroscopic approach and quantum-chemical calculations in order to investigate the delicate interplay of noncovalent interactions. The complementary results of vibrational and rotational spectroscopy applied in molecular beam experiments reveal the preference of a hydrogen bond of the methanol towards the ether oxygen (OH∙∙∙O) over the π-docking motifs via the phenyl and vinyl moieties, with an additional less populated OH∙∙∙P(phenyl)-bound isomer detected only by microwave spectroscopy. The correct prediction of the energetic order of the isomers using quantum-chemical calculations turns out to be challenging and succeeds with a sophisticated local coupled cluster method. The latter also yields a quantification as well as a visualization of London dispersion, which prove to be valuable tools for understanding the role of dispersion on the docking preferences. Beyond the structural analysis of the electronic ground state (S0), the electronically excited (S1) state is analyzed, in which a destabilization of the OH∙∙∙O structure compared to the S0 state is observed experimentally and theoretically.Entities:
Keywords: IR spectroscopy; dispersion interactions; quantum-chemical calculations; rotational spectroscopy; structure determination; weak hydrogen bonds
Year: 2018 PMID: 30013690 PMCID: PMC6036964 DOI: 10.3762/bjoc.14.140
Source DB: PubMed Journal: Beilstein J Org Chem ISSN: 1860-5397 Impact factor: 2.883
Figure 1Minimum structures of the most stable PVE–MeOH dimers obtained at the B3LYP-D3(BJ)/def2-TZVP level; dashed colored lines indicate the different primary docking motifs, dashed gray lines illustrate secondary CH–O contacts; values in parentheses correspond to the relative, zero-point-corrected energies E0,rel with respect to the OH–O isomer, calculated at the LCCSD(T0)-F12/CBS[T:Q]//B3LYP-D3/def2-TZVP level of theory (cf. Table 1).
Comparison of different structures for PVE–MeOH dimers in the S0 state with LCCSD(T0)-F12/CBS[T:Q]//B3LYP-D3/def2-TZVP electronic energies Erel and B3LYP zero-point corrected energies E0,rel relative to the minimum OH–O structure. The scaled wavenumbers of the OH-stretching vibration together with the respective IR intensity I are presented for two levels of theory: B3LYP-D3 (scaling factor: 0.9600) and SCS-CC2/def2-TZVP (scaling factor: 0.9635).
| B3LYP-D3 | SCS-CC2 | |||||
| OH–O | 0.0 | 0.0 | 3597 | 219 | 3619 | 160 |
| OH–O’ | −0.3 | 0.2 | 3600 | 193 | 3621 | 144 |
| OH–P | 1.4 | 1.0 | 3619 | 112 | 3631 | 67 |
| OH–P’ | 3.9 | 2.4 | 3631 | 127 | 3636 | 110 |
| OH–E | 1.5 | 2.0 | 3567 | 187 | 3607 | 121 |
| OH–E’ | 4.8 | 4.7 | 3567 | 197 | 3606 | 128 |
Comparison of different structures for PVE–MeOH dimers, with dispersion energies calculated at the LCCSD/VQZ-F12 level of theory (the parentheses contain the percentage of the fragment’s dispersion relative to the total dispersion energy).
| ∆ | ∆ | ∆ | ∆ | |
| OH–O | −14.3 | −6.2 (43.2) | −5.1 (35.8) | −3.0 (21.1) |
| OH–O’ | −15.7 | −6.1 (38.7) | −4.9 (31.5) | −4.7 (29.8) |
| OH–P | −16.9 | −11.9 (70.4) | −1.5 (9.2) | −3.5 (20.5) |
| OH–P’ | −16.0 | −14.0 (87.6) | −1.3 (8.0) | −0.7 (4.4) |
| OH–E | −15.6 | −6.9 (44.3) | −2.1 (13.3) | −6.6 (42.4) |
| OH–E’ | −13.1 | −4.5 (34.0) | −0.9 (6.7) | −7.8 (59.3) |
Figure 2Dispersion interaction density (DID) plots calculated at the LCCSD/VQZ-F12 level. The brown zones indicate regions of electron density in a monomer which interact strongly by dispersion interactions with the other molecule. Blue stands for weaker/diffuse contributions. For example, in the top left figure one can observe that the OH group of methanol interacts strongly with the ether oxygen, with some dispersion energy coming as well from a CH orbital in the phenyl close to the methanol.
Figure 3FTIR spectra of the supersonic expansion of methanol (MeOH) and phenyl vinyl ether (PVE) at different concentrations in helium. The spectra are spread out along the ordinate to improve visualization. Only one dominant mixed dimer band is visible in the spectra, lying at 3625 cm−1 (marked MeOH + PVE) between the methanol monomer at 3686 cm−1 (MeOH) and methanol dimer at 3575 cm−1 ((MeOH)2). By comparing the spectrum at the top with the other two spectra recorded at reduced concentrations of methanol (middle) or methanol and PVE (bottom), the further downshifted band at 3466 cm−1 can be attributed to a higher cluster, probably a methanol-rich mixed trimer ((MeOH)2 + PVE (?)), due to its scaling with the variation of the concentrations.
Figure 4The IR/R2PI spectrum in the range of 3520–3750 cm−1 was obtained via the excitation energy of 36885 cm−1 using the carrier gas neon; the asterisk (*) indicates ionization-induced fragmentation from larger clusters (cf. Figure S2 in Supporting Information File 1).
Experimental rotational constants of the two observed complexes, using neon as carrier gas, that are assigned to the OH–O’ and the OH–P isomers, respectively. The experimental rotational parameters for the OH–O’ isomer (called Exp 1) are the results of a fit to a rigid-rotor asymmetric Hamiltonian including solely the A lines of the internal rotation splitting. Rotational parameters of a global fit (XIAM) including both A and E levels due to internal rotation for the OH–O’ isomer are presented in the Table S9 of Supporting Information File 1.
| Complex 1 | Complex 2 | |||
| Exp 1 | SCS-CC2/def2-TZVP | Exp 1 | SCS-CC2/def2-TZVP | |
| 1466.59120(26) | 1501.94 | 1275.7623(49) | 1297.89 | |
| 697.48965(11) | 697.58 | 818.45271(73) | 818.01 | |
| 572.109900(95) | 589.94 | 640.2184(11) | 646.81 | |
| ∆J [kHz] | 0.72697(62) | 0.070(14) | ||
| ∆JK [kHz] | −0.6669(26) | 2.19(10) | ||
| ∆K [kHz] | 5.6217(62) | – | ||
| δJ [kHz] | 0.15121(11) | – | ||
| δK [kHz] | 2.5783(29) | – | ||
| A state transition | 213 (49/104/60) | 20(20/0/0) | ||
| Dipole moment (D) (μa/μb/μc) | 2.2/1.9/1.2 | 0.8/0.4/0.8 | ||
| σ [kHz] | 6.7 | 7.9 | ||
Figure 5A section of the experimental 2–8 GHz spectrum using a mixture of PVE and MeOH (3 million acquisitions). The upper experimental trace in black is compared with simulations, based on fitted parameters that can be assigned to the OH–O’ isomer (complex 1, red) for the PVE–MeOHcomplex. The observed complex has a clear splitting pattern due to the internal rotation of the methyl group of methanol, labeled with A and E. The experimental 13C positions (blue atoms) (rs substitution structure) deduced from a Kraitchman analysis are compared to the calculated structure at the SCS-CC2/def2-TZVP level of theory and further confirm the observation of the OH–O’ isomer.
Figure 6UV/IR/UV spectrum of PVE–MeOH in the range of 3520–3750 cm−1; excitation laser: 36741 cm−1, ionizing laser: 31847 cm−1, carrier gas helium; the lower trace shows the calculated OH stretching frequencies at the SCS-CC2/def2-TZVP level for the optimized S0 and S1 structure of the OH–O’ isomer scaled by 0.9635.