Literature DB >> 30011606

Consistencies and inconsistencies between model selection and link prediction in networks.

Toni Vallès-Català1, Tiago P Peixoto2,3, Marta Sales-Pardo1, Roger Guimerà1,4.   

Abstract

A principled approach to understand network structures is to formulate generative models. Given a collection of models, however, an outstanding key task is to determine which one provides a more accurate description of the network at hand, discounting statistical fluctuations. This problem can be approached using two principled criteria that at first may seem equivalent: selecting the most plausible model in terms of its posterior probability; or selecting the model with the highest predictive performance in terms of identifying missing links. Here we show that while these two approaches yield consistent results in most cases, there are also notable instances where they do not, that is, where the most plausible model is not the most predictive. We show that in the latter case the improvement of predictive performance can in fact lead to overfitting both in artificial and empirical settings. Furthermore, we show that, in general, the predictive performance is higher when we average over collections of models that are individually less plausible than when we consider only the single most plausible model.

Year:  2018        PMID: 30011606     DOI: 10.1103/PhysRevE.97.062316

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  3 in total

1.  Stacking models for nearly optimal link prediction in complex networks.

Authors:  Amir Ghasemian; Homa Hosseinmardi; Aram Galstyan; Edoardo M Airoldi; Aaron Clauset
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-04       Impact factor: 11.205

2.  Analysis of correlation-based biomolecular networks from different omics data by fitting stochastic block models.

Authors:  Katharina Baum; Jagath C Rajapakse; Francisco Azuaje
Journal:  F1000Res       Date:  2019-04-14

3.  Gene regulatory network inference in long-lived C. elegans reveals modular properties that are predictive of novel aging genes.

Authors:  Manusnan Suriyalaksh; Celia Raimondi; Abraham Mains; Anne Segonds-Pichon; Shahzabe Mukhtar; Sharlene Murdoch; Rebeca Aldunate; Felix Krueger; Roger Guimerà; Simon Andrews; Marta Sales-Pardo; Olivia Casanueva
Journal:  iScience       Date:  2021-12-20
  3 in total

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