Literature DB >> 30011500

Inverse finite-size scaling for high-dimensional significance analysis.

Yingying Xu1,2, Santeri Puranen1,2,3, Jukka Corander4,3, Yoshiyuki Kabashima5.   

Abstract

We propose an efficient procedure for significance determination in high-dimensional dependence learning based on surrogate data testing, termed inverse finite-size scaling (IFSS). The IFSS method is based on our discovery of a universal scaling property of random matrices which enables inference about signal behavior from much smaller scale surrogate data than the dimensionality of the original data. As a motivating example, we demonstrate the procedure for ultra-high-dimensional Potts models with order of 10^{10} parameters. IFSS reduces the computational effort of the data-testing procedure by several orders of magnitude, making it very efficient for practical purposes. This approach thus holds considerable potential for generalization to other types of complex models.

Year:  2018        PMID: 30011500     DOI: 10.1103/PhysRevE.97.062112

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  2 in total

1.  Global analysis of more than 50,000 SARS-CoV-2 genomes reveals epistasis between eight viral genes.

Authors:  Hong-Li Zeng; Vito Dichio; Edwin Rodríguez Horta; Kaisa Thorell; Erik Aurell
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-17       Impact factor: 11.205

2.  SuperDCA for genome-wide epistasis analysis.

Authors:  Santeri Puranen; Maiju Pesonen; Johan Pensar; Ying Ying Xu; John A Lees; Stephen D Bentley; Nicholas J Croucher; Jukka Corander
Journal:  Microb Genom       Date:  2018-05-29
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.