Literature DB >> 30009664

The phagophore in four dimensions-a study in wood.

John C Sewell1, Daniel J Klionsky2.   

Abstract

One of the key features of macroautophagy/autophagy is the dynamic nature of the membrane rearrangements that take place during expansion of the phagophore, the sequestering compartment that matures into an autophagosome. There are various ways to depict this process, but in most cases the method ultimately relies on a two-dimensional medium. Most people working in the field of autophagy realize that the typical 'C'-shaped drawing of a phagophore is meant to represent a cup- or bowl-like structure that exists in the cell in 3 dimensions. However, explaining this concept to a lay person often leads to confusion and misinterpretation. Accordingly, we decided to generate a four-dimensional version of the expanding phagophore as a wood sculpture, that depicts this transient compartment in 3 dimensions over time. ABBREVIATIONS: ER: endoplasmic reticulum.

Entities:  

Keywords:  Autophagosome; lysosome; membrane; molecular model; organelle; vacuole

Mesh:

Year:  2018        PMID: 30009664      PMCID: PMC6135633          DOI: 10.1080/15548627.2018.1493315

Source DB:  PubMed          Journal:  Autophagy        ISSN: 1554-8627            Impact factor:   16.016


  18 in total

1.  Starvation and ULK1-dependent cycling of mammalian Atg9 between the TGN and endosomes.

Authors:  Andrew R J Young; Edmond Y W Chan; Xiao Wen Hu; Robert Köchl; Samuel G Crawshaw; Stephen High; Dale W Hailey; Jennifer Lippincott-Schwartz; Sharon A Tooze
Journal:  J Cell Sci       Date:  2006-08-29       Impact factor: 5.285

2.  Mitochondria supply membranes for autophagosome biogenesis during starvation.

Authors:  Dale W Hailey; Angelika S Rambold; Prasanna Satpute-Krishnan; Kasturi Mitra; Rachid Sougrat; Peter K Kim; Jennifer Lippincott-Schwartz
Journal:  Cell       Date:  2010-05-14       Impact factor: 41.582

3.  3D tomography reveals connections between the phagophore and endoplasmic reticulum.

Authors:  Päivi Ylä-Anttila; Helena Vihinen; Eija Jokitalo; Eeva-Liisa Eskelinen
Journal:  Autophagy       Date:  2009-11-08       Impact factor: 16.016

4.  Autophagosome requires specific early Sec proteins for its formation and NSF/SNARE for vacuolar fusion.

Authors:  N Ishihara; M Hamasaki; S Yokota; K Suzuki; Y Kamada; A Kihara; T Yoshimori; T Noda; Y Ohsumi
Journal:  Mol Biol Cell       Date:  2001-11       Impact factor: 4.138

5.  The early secretory pathway contributes to autophagy in yeast.

Authors:  Maho Hamasaki; Takeshi Noda; Yoshinori Ohsumi
Journal:  Cell Struct Funct       Date:  2003-02       Impact factor: 2.212

6.  An Atg9-containing compartment that functions in the early steps of autophagosome biogenesis.

Authors:  Muriel Mari; Janice Griffith; Ester Rieter; Lakshmi Krishnappa; Daniel J Klionsky; Fulvio Reggiori
Journal:  J Cell Biol       Date:  2010-09-20       Impact factor: 10.539

Review 7.  ER-driven membrane contact sites: Evolutionary conserved machineries for stress response and autophagy regulation?

Authors:  Diana Molino; Anna Chiara Nascimbeni; Francesca Giordano; Patrice Codogno; Etienne Morel
Journal:  Commun Integr Biol       Date:  2017-12-13

8.  The ER-Golgi intermediate compartment is a key membrane source for the LC3 lipidation step of autophagosome biogenesis.

Authors:  Liang Ge; David Melville; Min Zhang; Randy Schekman
Journal:  Elife       Date:  2013-08-06       Impact factor: 8.140

9.  Membrane remodeling by the PX-BAR protein SNX18 promotes autophagosome formation.

Authors:  Helene Knævelsrud; Kristiane Søreng; Camilla Raiborg; Karin Håberg; Fredrik Rasmuson; Andreas Brech; Knut Liestøl; Tor Erik Rusten; Harald Stenmark; Thomas P Neufeld; Sven R Carlsson; Anne Simonsen
Journal:  J Cell Biol       Date:  2013-07-22       Impact factor: 10.539

10.  Diverse autophagosome membrane sources coalesce in recycling endosomes.

Authors:  Claudia Puri; Maurizio Renna; Carla F Bento; Kevin Moreau; David C Rubinsztein
Journal:  Cell       Date:  2013-09-12       Impact factor: 41.582

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  1 in total

1.  Found art: the yeast vacuole.

Authors:  Scott Hartley; Daniel J Klionsky
Journal:  Autophagy       Date:  2019-07-15       Impact factor: 16.016

  1 in total

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