Literature DB >> 30009245

Rapid detection of four non-fermenting Gram-negative bacteria directly from cystic fibrosis patient's respiratory samples on the BD MAX™ system.

Talita T Rocchetti1,2, Suzane Silbert1, Alicia Gostnell1, Carly Kubasek1, Robert Jerris3, Jennifer Vong3, Raymond Widen1.   

Abstract

The aim of this study was to develop a multiplex PCR test to detect Achromobacter xylosoxidans (AX), Burkholderia cepacia (BC), Pseudomonas aeruginosa (PSA) and Stenotrophomonas maltophilia (SM) directly from CF patient's respiratory samples using the open mode of the BD MAX™ System. A total of 402 CF respiratory samples were evaluated by culture and PCR. Specific sets of primers and probes for each target were designed in-house. Out of 402 samples tested, 196 were identified as negative and 206 as positive by culture for AX, PSA, BC and SM. Among culture positive samples, PCR detected 21/27 AX, 4/5 BC, 138/140 PSA and 29/34 SM. In addition, PCR assay identified 35 samples as positive that were initially negative by culture for those 4 targets. The CF BDM test proved to be an excellent tool to detect AX, BC, PSA and SM by real-time PCR on an automated platform.

Entities:  

Keywords:  Achromobacter xylosoxidana; BD Max; Burkholderia cepacia; Cystic Fibrosis; Pseudomonas aeruginosa; Stenotrophomonas maltophilia

Year:  2018        PMID: 30009245      PMCID: PMC6041425          DOI: 10.1016/j.plabm.2018.e00102

Source DB:  PubMed          Journal:  Pract Lab Med        ISSN: 2352-5517


  25 in total

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Authors:  Raymond Widen; Vicki Healer; Suzane Silbert
Journal:  J Clin Microbiol       Date:  2014-05-14       Impact factor: 5.948

Review 2.  The changing microbial epidemiology in cystic fibrosis.

Authors:  John J Lipuma
Journal:  Clin Microbiol Rev       Date:  2010-04       Impact factor: 26.132

Review 3.  Exacerbations in cystic fibrosis. 1: Epidemiology and pathogenesis.

Authors:  Christopher H Goss; Jane L Burns
Journal:  Thorax       Date:  2007-04       Impact factor: 9.139

4.  Physiology of epithelial chloride and fluid secretion.

Authors:  Raymond A Frizzell; John W Hanrahan
Journal:  Cold Spring Harb Perspect Med       Date:  2012-06       Impact factor: 6.915

Review 5.  Culture-based diagnostic microbiology in cystic fibrosis: can we simplify the complexity?

Authors:  Jane L Burns; Jean-Marc Rolain
Journal:  J Cyst Fibros       Date:  2013-10-03       Impact factor: 5.482

6.  Prospective evaluation of emerging bacteria in cystic fibrosis.

Authors:  G Steinkamp; B Wiedemann; E Rietschel; A Krahl; J Gielen; H Bärmeier; F Ratjen
Journal:  J Cyst Fibros       Date:  2005-03       Impact factor: 5.482

Review 7.  New concepts of the pathogenesis of cystic fibrosis lung disease.

Authors:  R C Boucher
Journal:  Eur Respir J       Date:  2004-01       Impact factor: 16.671

8.  Characterization of a naturally occurring class D beta-lactamase from Achromobacter xylosoxidans.

Authors:  Yohei Doi; Laurent Poirel; David L Paterson; Patrice Nordmann
Journal:  Antimicrob Agents Chemother       Date:  2008-03-24       Impact factor: 5.191

9.  Comparison of real time diagnostic chemistries to detect Pseudomonas aeruginosa in respiratory samples from cystic fibrosis patients.

Authors:  J L Fothergill; M J Ledson; M J Walshaw; P S McNamara; K W Southern; C Winstanley
Journal:  J Cyst Fibros       Date:  2013-05-29       Impact factor: 5.482

10.  Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections.

Authors:  Stephen J Salipante; Dhruba J Sengupta; Christopher Rosenthal; Gina Costa; Jessica Spangler; Elizabeth H Sims; Michael A Jacobs; Samuel I Miller; Daniel R Hoogestraat; Brad T Cookson; Connor McCoy; Frederick A Matsen; Jay Shendure; Clarence C Lee; Timothy T Harkins; Noah G Hoffman
Journal:  PLoS One       Date:  2013-05-29       Impact factor: 3.240

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  2 in total

1.  Duplex real-time PCR assay for the simultaneous detection of Achromobacter xylosoxidans and Achromobacter spp.

Authors:  Erin P Price; Valentina Soler Arango; Timothy J Kidd; Tamieka A Fraser; Thuy-Khanh Nguyen; Scott C Bell; Derek S Sarovich
Journal:  Microb Genom       Date:  2020-07-15

2.  Advances in the Microbiology of Stenotrophomonas maltophilia.

Authors:  Joanna S Brooke
Journal:  Clin Microbiol Rev       Date:  2021-05-26       Impact factor: 50.129

  2 in total

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