Literature DB >> 30008447

Functional Diversity of Diterpene Synthases in the Biofuel Crop Switchgrass.

Kyle A Pelot1, Ruibing Chen1,2, David M Hagelthorn1, Cari A Young1, J Bennett Addison3, Andrew Muchlinski4, Dorothea Tholl4, Philipp Zerbe5.   

Abstract

Diterpenoids constitute a diverse class of metabolites with critical functions in plant development, defense, and ecological adaptation. Major monocot crops, such as maize (Zea mays) and rice (Oryza sativa), deploy diverse blends of specialized diterpenoids as core components of biotic and abiotic stress resilience. Here, we describe the genome-wide identification and functional characterization of stress-related diterpene synthases (diTPSs) in the dedicated bioenergy crop switchgrass (Panicum virgatum). Mining of the allotetraploid switchgrass genome identified an expansive diTPS family of 31 members, and biochemical analysis of 11 diTPSs revealed a modular metabolic network producing a diverse array of diterpenoid metabolites. In addition to ent-copalyl diphosphate (CPP) and ent-kaurene synthases predictably involved in gibberellin biosynthesis, we identified syn-CPP and ent-labda-13-en-8-ol diphosphate (LPP) synthases as well as two diTPSs forming (+)-labda-8,13E-dienyl diphosphate (8,13-CPP) and ent-neo-cis-trans-clerodienyl diphosphate (CT-CLPP) scaffolds not observed previously in plants. Structure-guided mutagenesis of the (+)-8,13-CPP and ent-neo-CT-CLPP synthases revealed residue substitutions in the active sites that altered product outcome, representing potential neofunctionalization events that occurred during diversification of the switchgrass diTPS family. The conversion of ent-CPP, ent-LPP, syn-CPP, and ent-neo-CT-CLPP by promiscuous diTPSs further yielded distinct labdane-type diterpene olefins and alcohols. Of these metabolites, the formation of 9β-hydroxy-syn-pimar-15-ene and the expression of the corresponding genes were induced in roots and leaves in response to oxidative stress and ultraviolet irradiation, indicating their possible roles in abiotic stress adaptation. Together, these findings expand the known chemical space of diterpenoid metabolism in monocot crops toward systematically investigating and ultimately improving stress resilience traits in crop species.
© 2018 American Society of Plant Biologists. All rights reserved.

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Year:  2018        PMID: 30008447      PMCID: PMC6130043          DOI: 10.1104/pp.18.00590

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  97 in total

1.  The maize gene terpene synthase 1 encodes a sesquiterpene synthase catalyzing the formation of (E)-beta-farnesene, (E)-nerolidol, and (E,E)-farnesol after herbivore damage.

Authors:  Christiane Schnee; Tobias G Köllner; Jonathan Gershenzon; Jörg Degenhardt
Journal:  Plant Physiol       Date:  2002-12       Impact factor: 8.340

2.  CYP701A8: a rice ent-kaurene oxidase paralog diverted to more specialized diterpenoid metabolism.

Authors:  Qiang Wang; Matthew L Hillwig; Yisheng Wu; Reuben J Peters
Journal:  Plant Physiol       Date:  2012-01-12       Impact factor: 8.340

Review 3.  The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom.

Authors:  Feng Chen; Dorothea Tholl; Jörg Bohlmann; Eran Pichersky
Journal:  Plant J       Date:  2011-04       Impact factor: 6.417

4.  Manoyl oxide (13R), the biosynthetic precursor of forskolin, is synthesized in specialized root cork cells in Coleus forskohlii.

Authors:  Irini Pateraki; Johan Andersen-Ranberg; Britta Hamberger; Allison Maree Heskes; Helle Juel Martens; Philipp Zerbe; Søren Spanner Bach; Birger Lindberg Møller; Jörg Bohlmann; Björn Hamberger
Journal:  Plant Physiol       Date:  2014-01-30       Impact factor: 8.340

5.  Functional identification of rice syn-copalyl diphosphate synthase and its role in initiating biosynthesis of diterpenoid phytoalexin/allelopathic natural products.

Authors:  Meimei Xu; Matthew L Hillwig; Sladjana Prisic; Robert M Coates; Reuben J Peters
Journal:  Plant J       Date:  2004-08       Impact factor: 6.417

6.  Identification of syn-pimara-7,15-diene synthase reveals functional clustering of terpene synthases involved in rice phytoalexin/allelochemical biosynthesis.

Authors:  P Ross Wilderman; Meimei Xu; Yinghua Jin; Robert M Coates; Reuben J Peters
Journal:  Plant Physiol       Date:  2004-08-06       Impact factor: 8.340

7.  Cloning and characterization of the maize An1 gene.

Authors:  R J Bensen; G S Johal; V C Crane; J T Tossberg; P S Schnable; R B Meeley; S P Briggs
Journal:  Plant Cell       Date:  1995-01       Impact factor: 11.277

8.  Functional characterization of wheat ent-kaurene(-like) synthases indicates continuing evolution of labdane-related diterpenoid metabolism in the cereals.

Authors:  Ke Zhou; Meimei Xu; Mollie Tiernan; Qian Xie; Tomonobu Toyomasu; Chizu Sugawara; Madoka Oku; Masami Usui; Wataru Mitsuhashi; Makiko Chono; Peter M Chandler; Reuben J Peters
Journal:  Phytochemistry       Date:  2012-09-22       Impact factor: 4.072

9.  Changing Face: A Key Residue for the Addition of Water by Sclareol Synthase.

Authors:  Meirong Jia; Terrence E O'Brien; Yue Zhang; Justin B Siegel; Dean J Tantillo; Reuben J Peters
Journal:  ACS Catal       Date:  2018-03-08       Impact factor: 13.084

10.  Biosynthesis of the oxygenated diterpene nezukol in the medicinal plant Isodon rubescens is catalyzed by a pair of diterpene synthases.

Authors:  Kyle A Pelot; Lynne M Hagelthorn; J Bennett Addison; Philipp Zerbe
Journal:  PLoS One       Date:  2017-04-26       Impact factor: 3.240

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  10 in total

1.  Combinatorial biosynthesis and the basis for substrate promiscuity in class I diterpene synthases.

Authors:  Meirong Jia; Sambit K Mishra; Samuel Tufts; Robert L Jernigan; Reuben J Peters
Journal:  Metab Eng       Date:  2019-06-17       Impact factor: 9.783

2.  Conserved bases for the initial cyclase in gibberellin biosynthesis: from bacteria to plants.

Authors:  Cody Lemke; Kevin C Potter; Samuel Schulte; Reuben J Peters
Journal:  Biochem J       Date:  2019-09-24       Impact factor: 3.857

3.  Switchgrass Metabolomics Reveals Striking Genotypic and Developmental Differences in Specialized Metabolic Phenotypes.

Authors:  Xingxing Li; Saurav J Sarma; Lloyd W Sumner; A Daniel Jones; Robert L Last
Journal:  J Agric Food Chem       Date:  2022-06-21       Impact factor: 5.895

4.  Cytochrome P450-catalyzed biosynthesis of furanoditerpenoids in the bioenergy crop switchgrass (Panicum virgatum L.).

Authors:  Andrew Muchlinski; Meirong Jia; Kira Tiedge; Jason S Fell; Kyle A Pelot; Lisl Chew; Danielle Davisson; Yuxuan Chen; Justin Siegel; John T Lovell; Philipp Zerbe
Journal:  Plant J       Date:  2021-09-24       Impact factor: 7.091

5.  Foxtail mosaic virus-induced gene silencing (VIGS) in switchgrass (Panicum virgatum L.).

Authors:  Kira Tiedge; Janessa Destremps; Janet Solano-Sanchez; Magda Lisette Arce-Rodriguez; Philipp Zerbe
Journal:  Plant Methods       Date:  2022-05-30       Impact factor: 5.827

6.  Functional Characterization of Two Class II Diterpene Synthases Indicates Additional Specialized Diterpenoid Pathways in Maize (Zea mays).

Authors:  Katherine M Murphy; Li-Ting Ma; Yezhang Ding; Eric A Schmelz; Philipp Zerbe
Journal:  Front Plant Sci       Date:  2018-10-23       Impact factor: 5.753

Review 7.  Terpene Synthases as Metabolic Gatekeepers in the Evolution of Plant Terpenoid Chemical Diversity.

Authors:  Prema S Karunanithi; Philipp Zerbe
Journal:  Front Plant Sci       Date:  2019-10-01       Impact factor: 5.753

8.  Biosynthesis and Emission of Stress-Induced Volatile Terpenes in Roots and Leaves of Switchgrass (Panicum virgatum L.).

Authors:  Andrew Muchlinski; Xinlu Chen; John T Lovell; Tobias G Köllner; Kyle A Pelot; Philipp Zerbe; Meredith Ruggiero; LeMar Callaway; Suzanne Laliberte; Feng Chen; Dorothea Tholl
Journal:  Front Plant Sci       Date:  2019-09-19       Impact factor: 5.753

9.  Multiple genes recruited from hormone pathways partition maize diterpenoid defences.

Authors:  Yezhang Ding; Katherine M Murphy; Elly Poretsky; Sibongile Mafu; Bing Yang; Si Nian Char; Shawn A Christensen; Evan Saldivar; Mengxi Wu; Qiang Wang; Lexiang Ji; Robert J Schmitz; Karl A Kremling; Edward S Buckler; Zhouxin Shen; Steven P Briggs; Jörg Bohlmann; Andrew Sher; Gabriel Castro-Falcon; Chambers C Hughes; Alisa Huffaker; Philipp Zerbe; Eric A Schmelz
Journal:  Nat Plants       Date:  2019-09-16       Impact factor: 15.793

10.  The foxtail millet (Setaria italica) terpene synthase gene family.

Authors:  Prema S Karunanithi; David I Berrios; Sadira Wang; John Davis; Tong Shen; Oliver Fiehn; Julin N Maloof; Philipp Zerbe
Journal:  Plant J       Date:  2020-05-03       Impact factor: 6.417

  10 in total

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