Literature DB >> 30008070

Morphological Neuron Classification Based on Dendritic Tree Hierarchy.

Evelyn Perez Cervantes1, Cesar Henrique Comin2, Roberto Marcondes Cesar Junior3, Luciano da Fontoura Costa4.   

Abstract

The shape of a neuron can reveal interesting properties about its function. Therefore, morphological neuron characterization can contribute to a better understanding of how the brain works. However, one of the great challenges of neuroanatomy is the definition of morphological properties that can be used for categorizing neurons. This paper proposes a new methodology for neuron morphological analysis by considering different hierarchies of the dendritic tree for characterizing and categorizing neuronal cells. The methodology consists in using different strategies for decomposing the dendritic tree along its hierarchies, allowing the identification of relevant parts (possibly related to specific neuronal functions) for classification tasks. A set of more than 5000 neurons corresponding to 10 classes were examined with supervised classification algorithms based on this strategy. It was found that classification accuracies similar to those obtained by using whole neurons can be achieved by considering only parts of the neurons. Branches close to the soma were found to be particularly relevant for classification.

Keywords:  Data sharing; Dendritic arborization; Dendritic tree; Digital neuronal reconstruction; Feature selection; Morphological classification; Morphological reconstruction; Morphometry; Neuron; Supervised classification

Mesh:

Year:  2019        PMID: 30008070     DOI: 10.1007/s12021-018-9388-7

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  32 in total

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Authors:  Corinne M Teeter; Charles F Stevens
Journal:  Curr Biol       Date:  2011-12-08       Impact factor: 10.834

Review 2.  Development of dendritic form and function.

Authors:  Julie L Lefebvre; Joshua R Sanes; Jeremy N Kay
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Authors:  Marconi Soares Barbosa; Luciano da Fontoura Costa; Esmerindo de Sousa Bernardes
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Journal:  Brain Res Rev       Date:  2007-05-26

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Authors:  Yanbin Lu; Lawrence Carin; Ronald Coifman; William Shain; Badrinath Roysam
Journal:  Neuroinformatics       Date:  2015-01

Review 6.  Towards the automatic classification of neurons.

Authors:  Rubén Armañanzas; Giorgio A Ascoli
Journal:  Trends Neurosci       Date:  2015-03-09       Impact factor: 13.837

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Journal:  J Comp Neurol       Date:  1995-06-05       Impact factor: 3.215

8.  Digital reconstructions of neuronal morphology: three decades of research trends.

Authors:  Maryam Halavi; Kelly A Hamilton; Ruchi Parekh; Giorgio A Ascoli
Journal:  Front Neurosci       Date:  2012-04-23       Impact factor: 4.677

9.  Topological characterization of neuronal arbor morphology via sequence representation: I--motif analysis.

Authors:  Todd A Gillette; Giorgio A Ascoli
Journal:  BMC Bioinformatics       Date:  2015-07-10       Impact factor: 3.169

10.  A genetic and computational approach to structurally classify neuronal types.

Authors:  Uygar Sümbül; Sen Song; Kyle McCulloch; Michael Becker; Bin Lin; Joshua R Sanes; Richard H Masland; H Sebastian Seung
Journal:  Nat Commun       Date:  2014-03-24       Impact factor: 14.919

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