Literature DB >> 30007373

Adaptive resolution molecular dynamics technique: Down to the essential.

Christian Krekeler1, Animesh Agarwal2, Christoph Junghans3, Matej Praprotnik4, Luigi Delle Site1.   

Abstract

We investigate the role of the thermodynamic (TD) force as an essential and sufficient technical ingredient for an efficient and accurate adaptive resolution algorithm. Such a force applied in the coupling region of an adaptive resolution molecular dynamics setup assures thermodynamic equilibrium between atomistically resolved and coarse-grained regions, allowing the proper exchange of molecules. We numerically prove that indeed for systems as relevant as liquid water and 1,3-dimethylimidazolium chloride ionic liquid, the combined action of the TD force and thermostat allows for computationally efficient and numerically accurate simulations, beyond the current capabilities of adaptive resolution setups, which employ switching functions in the coupling region.

Entities:  

Year:  2018        PMID: 30007373     DOI: 10.1063/1.5031206

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Water structure near the surface of Weyl semimetals as catalysts in photocatalytic proton reduction.

Authors:  Jure Gujt; Peter Zimmer; Frederik Zysk; Vicky Süß; Claudia Felser; Matthias Bauer; Thomas D Kühne
Journal:  Struct Dyn       Date:  2020-05-12       Impact factor: 2.920

2.  Path Integral Molecular Dynamics of Liquid Water in a Mean-Field Particle Reservoir.

Authors:  Antonios Evangelakis; Sara Panahian Jand; Luigi Delle Site
Journal:  ChemistryOpen       Date:  2022-02-25       Impact factor: 2.630

Review 3.  From adaptive resolution to molecular dynamics of open systems.

Authors:  Robinson Cortes-Huerto; Matej Praprotnik; Kurt Kremer; Luigi Delle Site
Journal:  Eur Phys J B       Date:  2021-09-23       Impact factor: 1.500

4.  Modeling and scale-bridging using machine learning: nanoconfinement effects in porous media.

Authors:  Nicholas Lubbers; Animesh Agarwal; Yu Chen; Soyoun Son; Mohamed Mehana; Qinjun Kang; Satish Karra; Christoph Junghans; Timothy C Germann; Hari S Viswanathan
Journal:  Sci Rep       Date:  2020-08-07       Impact factor: 4.996

  4 in total

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