Literature DB >> 30006045

Viral metagenomics, genetic and evolutionary characteristics of Crimean-Congo hemorrhagic fever orthonairovirus in humans, Kosovo.

Petra Emmerich1, Xhevat Jakupi2, Ronald von Possel3, Lindita Berisha4, Bahrije Halili4, Stephan Günther5, Daniel Cadar6, Salih Ahmeti2, Jonas Schmidt-Chanasit7.   

Abstract

Crimean-Congo hemorrhagic fever orthonairovirus (CCHFV) is a tick-borne virus which causes severe disease in humans with fatality cases up to 30%. We investigated the genetic and evolutionary characteristics of CCHFV in Kosovo, in particular in humans and found that different virus variants of genotype V circulate, with Turkey as a possible origin for the progenitor of southern European CCHF outbreaks. Phylogenetic analyses also revealed a single introduction event and in situ evolution of CCHFV in this country. The viral metagenomics revealed a more abundant virome in the fatal CCHF cases and the presence of a novel tick-borne segmented RNA virus belonging to the recently discovered Jingmenvirus group which raises questions about the potential pathogenic effect of this novel virus on human and animal health.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  CCHFV; Evolution; Jingmenvirus; Kosovo; NGS

Mesh：

Substances：

Year:  2018        PMID： 30006045     DOI： 10.1016/j.meegid.2018.07.010

Source DB:  PubMed          Journal:  Infect Genet Evol        ISSN： 1567-1348            Impact factor:   3.342


  22 in total

1.  Presence of Segmented Flavivirus Infections in North America

Authors:  Kurt J Vandegrift; Arvind Kumar; Himanshu Sharma; Satyapramod Murthy; Laura D Kramer; Richard Ostfeld; Peter J Hudson; Amit Kapoor
Journal:  Emerg Infect Dis       Date:  2020-08       Impact factor: 6.883

2.  Detection of novel tick-borne pathogen, Alongshan virus, in Ixodes ricinus ticks, south-eastern Finland, 2019.

Authors:  Suvi Kuivanen; Lev Levanov; Lauri Kareinen; Tarja Sironen; Anne J Jääskeläinen; Ilya Plyusnin; Fathiah Zakham; Petra Emmerich; Jonas Schmidt-Chanasit; Jussi Hepojoki; Teemu Smura; Olli Vapalahti
Journal:  Euro Surveill       Date:  2019-07

3.  Viral Diversity of Tick Species Parasitizing Cattle and Dogs in Trinidad and Tobago.

Authors:  Stephen Sameroff; Rafal Tokarz; Roxanne Albertha Charles; Komal Jain; Alexandra Oleynik; Xiaoyu Che; Karla Georges; Christine V Carrington; W Ian Lipkin; Chris Oura
Journal:  Sci Rep       Date:  2019-07-18       Impact factor: 4.379

4.  Insights into the Host Range, Genetic Diversity, and Geographical Distribution of Jingmenviruses.

Authors:  Sarah Temmam; Thomas Bigot; Delphine Chrétien; Mathilde Gondard; Philippe Pérot; Virginie Pommelet; Evelyne Dufour; Stéphane Petres; Elodie Devillers; Thavry Hoem; Valérie Pinarello; Vibol Hul; Khamsing Vongphayloth; Jeffrey C Hertz; Irène Loiseau; Marine Dumarest; Veasna Duong; Muriel Vayssier-Taussat; Marc Grandadam; Emmanuel Albina; Philippe Dussart; Sara Moutailler; Julien Cappelle; Paul T Brey; Marc Eloit
Journal:  mSphere       Date:  2019-11-06       Impact factor: 4.389

5.  Proteomics Computational Analyses Suggest That the Envelope Glycoproteins of Segmented Jingmen Flavi-Like Viruses are Class II Viral Fusion Proteins (b-Penetrenes) with Mucin-Like Domains.

Authors:  Courtney E Garry; Robert F Garry
Journal:  Viruses       Date:  2020-02-27       Impact factor: 5.048

6.  Survey and Characterization of Jingmen Tick Virus Variants.

Authors:  Ender Dinçer; Sabri Hacıoğlu; Sırrı Kar; Nergis Emanet; Annika Brinkmann; Andreas Nitsche; Aykut Özkul; Yvonne-Marie Linton; Koray Ergünay
Journal:  Viruses       Date:  2019-11-17       Impact factor: 5.048

7.  RNA Viruses of Amblyomma variegatum and Rhipicephalus microplus and Cattle Susceptibility in the French Antilles.

Authors:  Mathilde Gondard; Sarah Temmam; Elodie Devillers; Valérie Pinarello; Thomas Bigot; Delphine Chrétien; Rosalie Aprelon; Muriel Vayssier-Taussat; Emmanuel Albina; Marc Eloit; Sara Moutailler
Journal:  Viruses       Date:  2020-01-26       Impact factor: 5.048

8.  Isolation and Characterisation of Alongshan Virus in Russia.

Authors:  Ivan S Kholodilov; Alexander G Litov; Alexander S Klimentov; Oxana A Belova; Alexandra E Polienko; Nikolai A Nikitin; Alexey M Shchetinin; Anna Y Ivannikova; Lesley Bell-Sakyi; Alexander S Yakovlev; Sergey V Bugmyrin; Liubov A Bespyatova; Larissa V Gmyl; Svetlana V Luchinina; Anatoly P Gmyl; Vladimir A Gushchin; Galina G Karganova
Journal:  Viruses       Date:  2020-03-26       Impact factor: 5.048

9.  Crimean-Congo Hemorrhagic Fever, Kosovo, 2013-2016.

Authors:  Salih Ahmeti; Lindita Berisha; Bahrije Halili; Florim Ahmeti; Ronald von Possel; Corinna Thomé-Bolduan; Anett Michel; Simone Priesnitz; Emil C Reisinger; Stephan Günther; Andreas Krüger; Kurtesh Sherifi; Xhevat Jakupi; Christoph J Hemmer; Petra Emmerich
Journal:  Emerg Infect Dis       Date:  2019-02       Impact factor: 6.883

10.  Geographical Variability Affects CCHFV Detection by RT-PCR: A Tool for In-Silico Evaluation of Molecular Assays.

Authors:  Cesare E M Gruber; Barbara Bartolini; Concetta Castilletti; Ali Mirazimi; Roger Hewson; Iva Christova; Tatjana Avšič; Roland Grunow; Anna Papa; María P Sánchez-Seco; Marion Kopmans; Giuseppe Ippolito; Maria R Capobianchi; Chantal B E M Reusken; Antonino Di Caro
Journal:  Viruses       Date:  2019-10-16       Impact factor: 5.048
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