| Literature DB >> 30003088 |
Yiliang Fang1, Jianqing Zhang1, Rongquan Wu2, Baohai Xue1, Qianqian Qian3, Bo Gao1.
Abstract
Aedes albopictus is a very important vector for pathogens of many infectious diseases including dengue fever. In this study, we explored the genetic polymorphism of Aedes albopictus strains in different geographical regions using DNA barcoding of mitochondrial COI (MT-COI) gene. We collected MT-COI sequence of 106 Aedes albopictus mosquitos from 6 provinces in China including Fujian, Guangdong, Hainan, Yunnan, and Taiwan. The length of the sequences is 709bp with the content of A+T (67.7%) greater than that of G+C (32.3%). We identified mutations in 90 (13.68%) loci, of which 57 (63.33%) are transitions, 28 (31.11%) are transversions, and 5 (5.56%) are hypervariable loci. In addition, we obtained 42 haplotypes, 4 (9.52%) of which are shared among different populations. The haplotype diversity of Aedes albopictus is 0.882 and nucleotide diversity is 0.01017. Moreover, the pedigree network diagram shows that most haplotypes are under parallel evolution, suggesting a local expansion of Aedes albopictus in history. Finally, the Neighbor-Joining tree of MT-COI haplotypes reveals a certain correlation between haplotype clusters and geographical distribution, and there are differences among Aedes albopictus in different geographical regions. In conclusion, DNA barcoding of MT-COI gene is an effective method to study the genetic structure of Aedes albopictus.Entities:
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Year: 2018 PMID: 30003088 PMCID: PMC5996416 DOI: 10.1155/2018/1501430
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Figure 1Collecting places of different geographical strains of Aedes albopictus.
Haplotype diversity and nucleotide diversity of different geographical strains.
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| Fujian | 20 | 12 | h1(2),h2 | 66 | 0.87895 | 0.03316 |
| Guangdong | 20 | 7 | h2 | 8 | 0.58421 | 0.00173 |
| Hainan | 19 | 9 | h18 | 11 | 0.86550 | 0.00265 |
| Yunnan | 20 | 11 | h18 | 13 | 0.88421 | 0.00372 |
| Taiwan | 22 | 8 | h2 | 11 | 0.75325 | 0.00215 |
| Liaoning | 5 | 1 | h2 | 0 | 0.00000 | 0.00000 |
Note. ∗ denotes shared haplotypes.
Figure 2The haplotypes pedigree network diagram of different geographical strains of Aedes albopictus MT-COI gene.
Figure 3The NJ tree of Aedes albopictus MT-COI gene haplotypes from different geographical strains.
The genetic distances within and between different geographical strains.
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| Fujian | 0.03535 | |||||
| Guangdong | 0.00173 | 0.02187 | ||||
| Hainan | 0.00266 | 0.02403 | 0.00421 | |||
| Yunnan | 0.00374 | 0.02473 | 0.00466 | 0.00361 | ||
| Taiwan | 0.00216 | 0.02252 | 0.00223 | 0.00462 | 0.00504 | |
| Liaoning | 0.00000 | 0.02122 | 0.00091 | 0.00337 | 0.00374 | 0.00132 |
The Fst (lower triangle) and Nm (upper triangle) values of different geographical strains of Aedes albopictus MT-COI gene.
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| Fujian | 1.40596 | 0.96993 | 0.94554 | 1.17849 | 9.35430 | |
| Guangdong | 0.15097 | 0.27134 | 0.35618 | 1.71757 | −4.09084 | |
| Hainan | 0.20493 | 0.47953 | 1.95012 | 0.27040 | 0.29583 | |
| Yunnan | 0.20911 | 0.41242 | 0.11363 | 0.34867 | 0.48844 | |
| Taiwan | 0.17501 | 0.12706 | 0.48040 | 0.41759 | 7.06422 | |
| Liaoning | 0.02603 | −0.06509 | 0.45802 | 0.33855 | 0.03418 | |
Note. ∗ represents p>0.05.
The AMOVA analysis of different geographical strains of Aedes albopictus MT-COI gene.
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| Between populations | 5 | 0.76116 | 21.87 |
| Within population | 100 | 2.71898 | 78.13 |
Note. Fst: 0.21871, Nm: 0.893.
The mismatch analysis of different geographical strains of Aedes albopictus.
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| SSD | 0.520 | 0.00 | 0.00 | 0.50 | 0.20 | 0.45 | 0.00 |
| HR | 0.790 | 1.00 | 1.00 | 0.25 | 0.30 | 0.40 | 0.00 |
Note. ∗ represents P<0.05.
Figure 4Mismatch distribution of Aedes albopictus MT-COI gene from different geographical regions.
The neutrality test of different geographical strains.
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| Overall | −1.991 | 0.002 | −24.983 | 0.000 | 3.943 |
| Fujian | 0.703 | 0.280 | −6.878 | 0.003 | 1.008 |
| Guangdong | −1.672 | 0.037 | −29.191 | 0.000 | 0.000 |
| Hainan | −1.604 | 0.038 | −27.472 | 0.000 | 2.242 |
| Yunnan | −1.205 | 0.119 | −26.629 | 0.000 | 3.820 |
| Taiwan | −1.837 | 0.019 | −27.981 | 0.000 | 2.070 |
| Liaoning | 0.000 | - |
| - | 0.000 |
Note: P>0.05.
Figure 5The relationship between genetic differentiation of Aedes albopictus MT-COI gene and geographical distance.