| Literature DB >> 30002894 |
Fatma Yesilyurt1, Abdullah Aydin2, Halise Inci Gul1, Mehmet Akkurt3, Nefise Dilek Ozcelik4.
Abstract
In the title compound, C18H19NO3S, the morpholine ring adopts a chair conformation. The thio-phene ring forms dihedral angles of 26.04 (9) and 74.07 (10)° with the benzene ring and the mean plane of the morpholine ring, respectively. The mol-ecular conformation is stabilized by an O-H⋯N hydrogen bond. In the crystal, mol-ecules are connected through C-H⋯O hydrogen bonds, forming wave-like layers parallel to the ab plane, which are further linked into a three-dimensional network by C-H⋯π inter-actions involving the benzene rings and the methyl-ene H atoms of the morpholine rings.Entities:
Keywords: HOMO; LUMO; Mannich bases; chalcones; crystal structure; quantum-chemical calculation; theoretical study
Year: 2018 PMID: 30002894 PMCID: PMC6038634 DOI: 10.1107/S2056989018008459
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound with displacement ellipsoids drawn at the 30% probability level
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C8–C13 benzene ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H1 | 0.83 (2) | 1.94 (2) | 2.6834 (18) | 149 (3) |
| C1—H1⋯O1i | 0.93 | 2.38 | 3.249 (2) | 156 |
| C2—H2⋯O2ii | 0.93 | 2.57 | 3.417 (2) | 152 |
| C16—H16 | 0.97 | 2.88 | 3.789 (2) | 157 |
| C18—H18 | 0.97 | 2.70 | 3.6010 (18) | 154 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 2The molecular packing of the title compound viewed down the a axis. Hydrogen bonds are shown as dashed lines.
Figure 3Spatial view of the title compound calculated using the CNDO method.
Figure 4Spatial view of the title compound calculated using the PM3 method
Comparison of experimental (X-ray), theoretical (CNDO and PM3) parameters (Å, °) of the title compound
| Bond/Angle | X-ray |
| PM3 |
|---|---|---|---|
| S1—C1 | 1.705 (2) | 1.7663 | 1.7194 |
| S1—C4 | 1.720 (2) | 1.7758 | 1.7449 |
| O1—C7 | 1.224 (2) | 1.2143 | 1.2196 |
| O2—C11 | 1.354 (2) | 1.3565 | 1.3663 |
| O3—C16 | 1.419 (2) | 1.4208 | 1.4149 |
| O3—C17 | 1.422 (2) | 1.4209 | 1.4153 |
| N1—C14 | 1.472 (2) | 1.4606 | 1.4916 |
| N1—C15 | 1.469 (2) | 1.4573 | 1.4914 |
| N1—C18 | 1.469 (2) | 1.4567 | 1.4906 |
| C1—S1—C4 | 92.20 (9) | 88.91 | 91.38 |
| C16—O3—C17 | 109.29 (13) | 110.44 | 112.79 |
| C14—N1—C15 | 111.86 (13) | 111.15 | 112.06 |
| C14—N1—C18 | 110.61 (13) | 111.92 | 112.86 |
| C15—N1—C18 | 109.09 (13) | 109.64 | 111.62 |
| S1—C1—C2 | 111.75 (15) | 111.11 | 112.58 |
| S1—C4—C5 | 123.58 (12) | 126.03 | 125.76 |
| S1—C4—C3 | 109.79 (12) | 109.88 | 111.11 |
| O1—C7—C6 | 120.42 (14) | 119.03 | 122.82 |
| O1—C7—C8 | 119.90 (14) | 123.49 | 121.52 |
| O2—C11—C10 | 118.59 (14) | 119.87 | 115.22 |
| O2—C11—C12 | 121.18 (14) | 122.06 | 123.98 |
| N1—C14—C12 | 112.14 (12) | 112.35 | 111.21 |
| N1—C15—C16 | 109.98 (14) | 110.79 | 109.89 |
| O3—C16—C15 | 111.42 (17) | 109.89 | 112.44 |
| O3—C17—C18 | 111.22 (14) | 110.05 | 112.30 |
| N1—C18—C17 | 109.80 (15) | 110.73 | 110.02 |
Experimental details
| Crystal data | |
| Chemical formula | C18H19NO3S |
|
| 329.40 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 293 |
|
| 9.4939 (5), 18.5548 (10), 9.5068 (5) |
| β (°) | 96.788 (3) |
|
| 1662.95 (15) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.21 |
| Crystal size (mm) | 0.81 × 0.50 × 0.48 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.882, 0.905 |
| No. of measured, independent and observed [ | 33902, 4168, 3373 |
|
| 0.033 |
| (sin θ/λ)max (Å−1) | 0.670 |
| Refinement | |
|
| 0.050, 0.138, 1.03 |
| No. of reflections | 4168 |
| No. of parameters | 211 |
| No. of restraints | 1 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.32, −0.25 |
Computer programs: APEX2 and SAINT (Bruker, 2007 ▸), SHELXS2014 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2008 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸).
| C18H19NO3S | |
| Monoclinic, | Mo |
| Cell parameters from 9868 reflections | |
| θ = 2.2–28.4° | |
| µ = 0.21 mm−1 | |
| β = 96.788 (3)° | |
| Prism, colourless | |
| 0.81 × 0.50 × 0.48 mm |
| Bruker APEXII CCD diffractometer | 4168 independent reflections |
| Radiation source: sealed tube | 3373 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.5°, θmin = 2.2° |
| Absorption correction: multi-scan (SADABS; Bruker, 2007) | |
| 33902 measured reflections |
| Refinement on | 1 restraint |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 4168 reflections | Δρmax = 0.32 e Å−3 |
| 211 parameters | Δρmin = −0.25 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.3316 (2) | −0.02309 (12) | 0.2121 (3) | 0.0720 (6) | |
| H1 | 0.235465 | −0.019863 | 0.221873 | 0.086* | |
| C2 | 0.3860 (2) | −0.06817 (11) | 0.1231 (2) | 0.0623 (5) | |
| H2 | 0.331381 | −0.099790 | 0.063433 | 0.075* | |
| C3 | 0.53423 (18) | −0.06285 (9) | 0.12897 (19) | 0.0522 (4) | |
| H3 | 0.587701 | −0.090438 | 0.073164 | 0.063* | |
| C4 | 0.59198 (16) | −0.01301 (8) | 0.22504 (17) | 0.0441 (3) | |
| C5 | 0.74016 (16) | 0.00373 (8) | 0.25820 (17) | 0.0447 (3) | |
| H5 | 0.802258 | −0.022598 | 0.209531 | 0.054* | |
| C6 | 0.79903 (17) | 0.05204 (9) | 0.34953 (18) | 0.0465 (4) | |
| H6 | 0.741687 | 0.080254 | 0.400249 | 0.056* | |
| C7 | 0.95402 (16) | 0.06168 (8) | 0.37183 (17) | 0.0433 (3) | |
| C8 | 1.01520 (15) | 0.12698 (8) | 0.44638 (15) | 0.0398 (3) | |
| C9 | 0.93436 (16) | 0.18710 (8) | 0.47309 (16) | 0.0435 (3) | |
| H9 | 0.836671 | 0.186378 | 0.448048 | 0.052* | |
| C10 | 0.99807 (17) | 0.24766 (8) | 0.53638 (17) | 0.0456 (3) | |
| H10 | 0.943157 | 0.287658 | 0.552522 | 0.055* | |
| C11 | 1.14360 (16) | 0.24932 (8) | 0.57615 (15) | 0.0410 (3) | |
| C12 | 1.22777 (15) | 0.18990 (8) | 0.54966 (15) | 0.0390 (3) | |
| C13 | 1.16227 (15) | 0.13017 (8) | 0.48509 (15) | 0.0397 (3) | |
| H13 | 1.217489 | 0.090658 | 0.466589 | 0.048* | |
| C14 | 1.38542 (17) | 0.19118 (9) | 0.59817 (18) | 0.0473 (4) | |
| H14A | 1.401057 | 0.181264 | 0.698985 | 0.057* | |
| H14B | 1.431423 | 0.153440 | 0.549728 | 0.057* | |
| C15 | 1.45567 (19) | 0.27260 (10) | 0.41787 (17) | 0.0533 (4) | |
| H15A | 1.360309 | 0.272216 | 0.368303 | 0.064* | |
| H15B | 1.508851 | 0.233930 | 0.380183 | 0.064* | |
| C16 | 1.5255 (2) | 0.34382 (12) | 0.3944 (2) | 0.0645 (5) | |
| H16A | 1.529884 | 0.350654 | 0.293866 | 0.077* | |
| H16B | 1.468902 | 0.382512 | 0.427116 | 0.077* | |
| C17 | 1.65806 (19) | 0.33755 (12) | 0.6150 (2) | 0.0603 (5) | |
| H17A | 1.601485 | 0.375827 | 0.649325 | 0.072* | |
| H17B | 1.752902 | 0.340669 | 0.665265 | 0.072* | |
| C18 | 1.59421 (16) | 0.26603 (10) | 0.64480 (18) | 0.0507 (4) | |
| H18A | 1.652343 | 0.227514 | 0.613763 | 0.061* | |
| H18B | 1.591062 | 0.260745 | 0.745894 | 0.061* | |
| N1 | 1.45003 (13) | 0.26102 (7) | 0.56999 (13) | 0.0425 (3) | |
| O1 | 1.03248 (13) | 0.01683 (7) | 0.32762 (15) | 0.0605 (3) | |
| O2 | 1.20139 (14) | 0.30917 (7) | 0.64087 (14) | 0.0548 (3) | |
| O3 | 1.66467 (14) | 0.34704 (8) | 0.46745 (15) | 0.0686 (4) | |
| S1 | 0.45988 (5) | 0.02779 (3) | 0.30547 (7) | 0.0781 (2) | |
| H1O | 1.2875 (19) | 0.3090 (18) | 0.633 (3) | 0.117* |
| C1 | 0.0407 (9) | 0.0815 (14) | 0.0932 (15) | 0.0020 (9) | 0.0062 (9) | −0.0139 (12) |
| C2 | 0.0505 (10) | 0.0600 (11) | 0.0743 (13) | −0.0078 (8) | −0.0017 (9) | −0.0083 (9) |
| C3 | 0.0508 (9) | 0.0475 (9) | 0.0585 (10) | 0.0007 (7) | 0.0072 (7) | −0.0053 (7) |
| C4 | 0.0416 (8) | 0.0406 (8) | 0.0499 (8) | 0.0049 (6) | 0.0046 (6) | 0.0006 (6) |
| C5 | 0.0417 (8) | 0.0414 (7) | 0.0515 (8) | 0.0031 (6) | 0.0073 (6) | 0.0028 (6) |
| C6 | 0.0419 (8) | 0.0443 (8) | 0.0538 (9) | 0.0012 (6) | 0.0084 (7) | −0.0019 (7) |
| C7 | 0.0426 (8) | 0.0413 (8) | 0.0470 (8) | −0.0013 (6) | 0.0094 (6) | 0.0031 (6) |
| C8 | 0.0394 (7) | 0.0408 (7) | 0.0405 (7) | −0.0009 (6) | 0.0098 (6) | 0.0044 (6) |
| C9 | 0.0370 (7) | 0.0476 (8) | 0.0472 (8) | 0.0017 (6) | 0.0102 (6) | 0.0029 (6) |
| C10 | 0.0451 (8) | 0.0430 (8) | 0.0505 (9) | 0.0060 (6) | 0.0132 (7) | −0.0018 (6) |
| C11 | 0.0468 (8) | 0.0414 (7) | 0.0359 (7) | −0.0002 (6) | 0.0086 (6) | 0.0015 (6) |
| C12 | 0.0388 (7) | 0.0417 (7) | 0.0367 (7) | 0.0007 (6) | 0.0052 (6) | 0.0066 (6) |
| C13 | 0.0401 (7) | 0.0372 (7) | 0.0427 (7) | 0.0034 (6) | 0.0090 (6) | 0.0049 (6) |
| C14 | 0.0427 (8) | 0.0468 (8) | 0.0509 (9) | 0.0011 (6) | −0.0012 (6) | 0.0040 (7) |
| C15 | 0.0532 (9) | 0.0672 (11) | 0.0389 (8) | −0.0119 (8) | 0.0035 (7) | −0.0032 (7) |
| C16 | 0.0651 (11) | 0.0769 (13) | 0.0532 (10) | −0.0191 (10) | 0.0138 (8) | 0.0029 (9) |
| C17 | 0.0433 (9) | 0.0802 (13) | 0.0587 (10) | −0.0145 (8) | 0.0114 (7) | −0.0211 (9) |
| C18 | 0.0379 (8) | 0.0673 (11) | 0.0461 (8) | 0.0016 (7) | 0.0016 (6) | −0.0121 (7) |
| N1 | 0.0376 (6) | 0.0507 (7) | 0.0388 (6) | −0.0043 (5) | 0.0032 (5) | −0.0020 (5) |
| O1 | 0.0456 (6) | 0.0539 (7) | 0.0837 (9) | 0.0002 (5) | 0.0151 (6) | −0.0174 (6) |
| O2 | 0.0554 (7) | 0.0482 (6) | 0.0605 (7) | −0.0024 (5) | 0.0059 (6) | −0.0127 (5) |
| O3 | 0.0540 (7) | 0.0911 (10) | 0.0646 (8) | −0.0251 (7) | 0.0234 (6) | −0.0133 (7) |
| S1 | 0.0495 (3) | 0.0889 (4) | 0.0965 (4) | 0.0074 (2) | 0.0111 (3) | −0.0427 (3) |
| C1—C2 | 1.336 (3) | C11—C12 | 1.402 (2) |
| C1—S1 | 1.705 (2) | C12—C13 | 1.379 (2) |
| C1—H1 | 0.9300 | C12—C14 | 1.513 (2) |
| C2—C3 | 1.406 (2) | C13—H13 | 0.9300 |
| C2—H2 | 0.9300 | C14—N1 | 1.472 (2) |
| C3—C4 | 1.368 (2) | C14—H14A | 0.9700 |
| C3—H3 | 0.9300 | C14—H14B | 0.9700 |
| C4—C5 | 1.439 (2) | C15—N1 | 1.469 (2) |
| C4—S1 | 1.7197 (16) | C15—C16 | 1.507 (3) |
| C5—C6 | 1.325 (2) | C15—H15A | 0.9700 |
| C5—H5 | 0.9300 | C15—H15B | 0.9700 |
| C6—C7 | 1.473 (2) | C16—O3 | 1.419 (2) |
| C6—H6 | 0.9300 | C16—H16A | 0.9700 |
| C7—O1 | 1.2239 (19) | C16—H16B | 0.9700 |
| C7—C8 | 1.487 (2) | C17—O3 | 1.422 (2) |
| C8—C9 | 1.394 (2) | C17—C18 | 1.500 (3) |
| C8—C13 | 1.403 (2) | C17—H17A | 0.9700 |
| C9—C10 | 1.380 (2) | C17—H17B | 0.9700 |
| C9—H9 | 0.9300 | C18—N1 | 1.4691 (19) |
| C10—C11 | 1.389 (2) | C18—H18A | 0.9700 |
| C10—H10 | 0.9300 | C18—H18B | 0.9700 |
| C11—O2 | 1.3538 (19) | O2—H1O | 0.830 (18) |
| C2—C1—S1 | 111.75 (15) | C8—C13—H13 | 118.9 |
| C2—C1—H1 | 124.1 | N1—C14—C12 | 112.14 (12) |
| S1—C1—H1 | 124.1 | N1—C14—H14A | 109.2 |
| C1—C2—C3 | 113.02 (18) | C12—C14—H14A | 109.2 |
| C1—C2—H2 | 123.5 | N1—C14—H14B | 109.2 |
| C3—C2—H2 | 123.5 | C12—C14—H14B | 109.2 |
| C4—C3—C2 | 113.24 (16) | H14A—C14—H14B | 107.9 |
| C4—C3—H3 | 123.4 | N1—C15—C16 | 109.98 (14) |
| C2—C3—H3 | 123.4 | N1—C15—H15A | 109.7 |
| C3—C4—C5 | 126.63 (15) | C16—C15—H15A | 109.7 |
| C3—C4—S1 | 109.79 (12) | N1—C15—H15B | 109.7 |
| C5—C4—S1 | 123.58 (12) | C16—C15—H15B | 109.7 |
| C6—C5—C4 | 127.99 (15) | H15A—C15—H15B | 108.2 |
| C6—C5—H5 | 116.0 | O3—C16—C15 | 111.42 (17) |
| C4—C5—H5 | 116.0 | O3—C16—H16A | 109.3 |
| C5—C6—C7 | 120.90 (15) | C15—C16—H16A | 109.3 |
| C5—C6—H6 | 119.6 | O3—C16—H16B | 109.3 |
| C7—C6—H6 | 119.6 | C15—C16—H16B | 109.3 |
| O1—C7—C6 | 120.42 (14) | H16A—C16—H16B | 108.0 |
| O1—C7—C8 | 119.90 (14) | O3—C17—C18 | 111.22 (14) |
| C6—C7—C8 | 119.67 (13) | O3—C17—H17A | 109.4 |
| C9—C8—C13 | 118.09 (14) | C18—C17—H17A | 109.4 |
| C9—C8—C7 | 123.12 (14) | O3—C17—H17B | 109.4 |
| C13—C8—C7 | 118.69 (13) | C18—C17—H17B | 109.4 |
| C10—C9—C8 | 120.57 (14) | H17A—C17—H17B | 108.0 |
| C10—C9—H9 | 119.7 | N1—C18—C17 | 109.80 (15) |
| C8—C9—H9 | 119.7 | N1—C18—H18A | 109.7 |
| C9—C10—C11 | 120.48 (14) | C17—C18—H18A | 109.7 |
| C9—C10—H10 | 119.8 | N1—C18—H18B | 109.7 |
| C11—C10—H10 | 119.8 | C17—C18—H18B | 109.7 |
| O2—C11—C10 | 118.59 (14) | H18A—C18—H18B | 108.2 |
| O2—C11—C12 | 121.18 (14) | C18—N1—C15 | 109.09 (13) |
| C10—C11—C12 | 120.23 (14) | C18—N1—C14 | 110.61 (13) |
| C13—C12—C11 | 118.39 (13) | C15—N1—C14 | 111.86 (13) |
| C13—C12—C14 | 121.74 (13) | C11—O2—H1O | 108 (2) |
| C11—C12—C14 | 119.80 (13) | C16—O3—C17 | 109.29 (13) |
| C12—C13—C8 | 122.22 (13) | C1—S1—C4 | 92.20 (9) |
| C12—C13—H13 | 118.9 | ||
| S1—C1—C2—C3 | 0.3 (3) | C10—C11—C12—C14 | −177.78 (14) |
| C1—C2—C3—C4 | 0.4 (3) | C11—C12—C13—C8 | −0.4 (2) |
| C2—C3—C4—C5 | 178.40 (16) | C14—C12—C13—C8 | 176.60 (13) |
| C2—C3—C4—S1 | −0.9 (2) | C9—C8—C13—C12 | 0.9 (2) |
| C3—C4—C5—C6 | 179.33 (18) | C7—C8—C13—C12 | 177.50 (13) |
| S1—C4—C5—C6 | −1.5 (3) | C13—C12—C14—N1 | 140.07 (14) |
| C4—C5—C6—C7 | 179.26 (15) | C11—C12—C14—N1 | −42.94 (19) |
| C5—C6—C7—O1 | −13.9 (3) | N1—C15—C16—O3 | 58.3 (2) |
| C5—C6—C7—C8 | 165.08 (15) | O3—C17—C18—N1 | −59.52 (19) |
| O1—C7—C8—C9 | 166.04 (15) | C17—C18—N1—C15 | 56.66 (17) |
| C6—C7—C8—C9 | −12.9 (2) | C17—C18—N1—C14 | −179.90 (13) |
| O1—C7—C8—C13 | −10.4 (2) | C16—C15—N1—C18 | −55.98 (19) |
| C6—C7—C8—C13 | 170.68 (14) | C16—C15—N1—C14 | −178.68 (15) |
| C13—C8—C9—C10 | −0.3 (2) | C12—C14—N1—C18 | 167.76 (13) |
| C7—C8—C9—C10 | −176.70 (14) | C12—C14—N1—C15 | −70.41 (17) |
| C8—C9—C10—C11 | −0.8 (2) | C15—C16—O3—C17 | −59.5 (2) |
| C9—C10—C11—O2 | −178.50 (14) | C18—C17—O3—C16 | 60.1 (2) |
| C9—C10—C11—C12 | 1.3 (2) | C2—C1—S1—C4 | −0.7 (2) |
| O2—C11—C12—C13 | 179.13 (13) | C3—C4—S1—C1 | 0.90 (15) |
| C10—C11—C12—C13 | −0.7 (2) | C5—C4—S1—C1 | −178.40 (16) |
| O2—C11—C12—C14 | 2.0 (2) |
| H··· | ||||
| O2—H1 | 0.83 (2) | 1.94 (2) | 2.6834 (18) | 149 (3) |
| C1—H1···O1i | 0.93 | 2.38 | 3.249 (2) | 156 |
| C2—H2···O2ii | 0.93 | 2.57 | 3.417 (2) | 152 |
| C5—H5···O1 | 0.93 | 2.45 | 2.786 (2) | 101 |
| C16—H16 | 0.97 | 2.88 | 3.789 (2) | 157 |
| C18—H18 | 0.97 | 2.70 | 3.6010 (18) | 154 |