Literature DB >> 30002889

Crystal structure and Hirshfeld surface analysis of (2E)-3-(3-chloro-phen-yl)-1-(3,4-di-meth-oxy-phen-yl)prop-2-en-1-one.

S N Sheshadri1, Zeliha Atioğlu2, Mehmet Akkurt3, C S Chidan Kumar4, Ching Kheng Quah5, B P Siddaraju6, M K Veeraiah7.   

Abstract

In title compound, C17H15ClO3, the dihedral angle between the benzene and chloro-phenyl rings is 18.46 (7)°. In the crystal, mol-ecules are linked by C-H⋯O hydrogen contacts, enclosing an R22(14) ring motif, and by a further C-H⋯O hydrogen contact, forming a two-dimensional supra-molecular structure extending along the direction parallel to the ac plane. Hirshfeld surface analysis shows that van der Waals inter-actions constitute the major contribution to the inter-molecular inter-actions, with H⋯H contacts accounting for 36.2% of the surface.

Entities:  

Keywords:  3,4-di­meth­oxy­phenyl ring; 3-chloro­phenyl ring; Hirshfeld surface analysis; crystal structure; hydrogen contacts; ring motif

Year:  2018        PMID: 30002889      PMCID: PMC6038638          DOI: 10.1107/S205698901800837X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Materials exhibiting two photon absorption (TPA) have wide applications such as frequency-up lasing, multi-photon microscopy, three-dimensional fluorescence imaging, eye and sensor protection. Materials with potential non-linear optical (NLO) properties have significant applications in the field of photonics. Chalcone and its derivatives have attracted significant attention in the past few years because of their availability of high optical non-linearities resulting from the significant delocalization of π-conjugated electron clouds throughout the chalcone system, providing a large charge-transfer axis with appropriate substituents on the terminal aromatic rings. The second harmonic generation (SHG) efficiency of these compounds is due to the strong inter­molecular electron–donor–acceptor inter­actions, which may also enhance the non-linear optical (NLO) properties. With the possibility of developing low-cost, large-area and flexible electronic devices, π-conjugated systems have been studied extensively for their optoelectronic properties (Chandra Shekhara Shetty et al., 2016 ▸, 2017 ▸).

Structural commentary

The mol­ecular structure of the title compound is shown in Fig. 1 ▸. The title compound is constructed from two aromatic rings (chlorophenyl and terminal meth­oxy­phenyl rings), which are linked by a C=CC(=O)—C enone bridge. Compared to the nearly coplanar arrangement of rings in the title compound, the molecule is twisted substanti­ally [C5—C6—C7—O3 = 3.5 (2) ° and O3—C7—C8—C9 = 10.5 (2) °] about the enone bridge, which may arise from steric repulsion with the ortho-O2 atom. Hence, the dihedral angle between the 3,4-meth­oxy­phenyl and chloro­phenyl rings increases to 18.46 (7)°. The C atoms of the meth­oxy groups are close to the plane of their attached ring: deviations of C16 and C17 are 0.252 (2) and 0.038 (2) Å, respectively. The bond lengths and angles are comparable with those in the similar compounds (E)-3-(3,4-di­meth­oxy­phen­yl)-1-(1-hy­droxy­naph­th­alen-2­yl)prop-2-en-1-one (Ezhilarasi et al., 2015 ▸), (E)-1-(3-bromo­phen­yl)-3-(3,4-di­meth­oxy­phen­yl)prop-2-en-1-one (Esco­bar et al., 2012 ▸) and (E)-3-(2-bromo­phen­yl)-1-(3,4-di­meth­oxy­phen­yl)prop-2-en-1-one (Li et al., 2012 ▸).
Figure 1

The mol­ecular structure of the title compound, showing the atom labelling and displacement ellipsoids drawn at the 50% probability level.

Supra­molecular features and Hirshfeld surface analysis

In the crystal, mol­ecules are linked by C—H⋯O hydrogen contacts (Table 1 ▸, Fig. 2 ▸), enclosing an (14) ring motif, and by a further C—H⋯O hydrogen contact, forming a three-dimensional structure extending in the a- and c-axis directions.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C11—H11A⋯O3i 0.932.543.417 (2)157
C15—H15A⋯O2ii 0.932.543.4378 (18)163

Symmetry codes: (i) ; (ii) .

Figure 2

A view along the a axis of the crystal packing of the title compound. Inter­molecular inter­actions are shown as dashed lines.

Hirshfeld surfaces and fingerprint plots were generated for the title compound based on the crystallographic information file (CIF) using CrystalExplorer (McKinnon et al., 2007 ▸). Hirshfeld surfaces enable the visualization of inter­molecular inter­actions by different colors and color intensity, representing short or long contacts and indicating the relative strength of the inter­actions. Figs. 3 ▸ and 4 ▸ show the Hirshfeld surfaces mapped over d norm(−0.16 to 1.25 a.u.) and shape-index (−1.0 to 1.0 a.u.).
Figure 3

View of the three-dimensional Hirshfeld surface of the title compound mapped over d norm.

Figure 4

Hirshfeld surface of the title complex plotted over shape-index.

In Fig. 3 ▸, the spots near atoms O2 and O3 result from the C15—H15A⋯O2ii and C11—H11A⋯O3i inter­actions significant in the mol­ecule packing of the title compound (Table 1 ▸). Some of the short inter­molecular contacts for the title compound are listed in Table 2 ▸. The Hirshfeld surfaces illustrated in Fig. 3 ▸ also reflect the involvement of different atoms in the inter­molecular inter­actions through the appearance of blue and red regions around the participating atoms, which correspond to positive and negative electrostatic potential, respectively.
Table 2

Summary of short inter­atomic contacts (Å) in the title compound

ContactDistanceSymmetry operation
Cl1⋯H17B 3.05−1 + x, 1 + y, z
Cl1⋯C13.4666 (15)  − x,  + y,  − z
O2⋯H15A 2.54  − x, − + y,  − z
O1⋯H17A 2.86  − x,  + y,  − z
H17C⋯C102.881 + x, y, z
H11A⋯O32.541 − x, 1 − y, −z
C1⋯Cl13.4666 (15)  − x, − + y,  − z
H15A⋯O22.54  − x,  + y,  − z
C10⋯H17C 2.88−1 + x, y, z
C13⋯C133.497 (2)x, 2 − y, −z
H13A⋯H16A 2.46 + x,  − y, −  + z
H16A⋯H13A 2.46  + x,  − y,  + z
H17A⋯O12.86  − x, − + y,  − z
H17B⋯Cl13.051 + x, −1 + y, z
The overall two-dimensional fingerprint plot for the title compound and those delineated into H⋯H, C⋯H/H⋯C, H⋯O/O⋯H, Cl⋯H/H⋯Cl and Cl⋯C/C⋯Cl contacts are illustrated in Fig. 5 ▸; the percentage contributions from the different inter­atomic contacts to the Hirshfeld surfaces are as follows: H⋯H (36.2%), C⋯H/H⋯C (24.6%), H⋯O/O⋯H (19.2%), Cl⋯H/H⋯Cl (10.5%), Cl⋯C/C⋯Cl (5.8%), CC (3.3%), Cl⋯O/O⋯Cl (0.3%) and O⋯C/C⋯O (0.2%), as shown in the two-dimensional fingerprint plots in Fig. 4 ▸.
Figure 5

The two-dimensional fingerprint plots of the title compound, showing (a) all inter­actions, and delineated into (b) H⋯H, (c) C⋯H, (d) O⋯H, (e) Cl⋯H and (f) Cl⋯C inter­actions [d e and d i represent the distances from a point on the Hirshfeld surface to the nearest atoms outside (external) and inside (inter­nal) the surface, respectively].

Synthesis and crystallization

The reagents and solvents for the synthesis were obtained from the Aldrich Chemical Co. and were used without additional purification. 1-(3,4-Di­meth­oxy­phen­yl) ethanone (0.01 mol) and 3-chloro­benzaldehyde (0.01 mol) were dissolved in 20 ml methanol. A catalytic amount of NaOH was added to the solution dropwise with vigorous stirring. The reaction mixture was stirred for about 5–6 h at room temperature. The progress of the reaction was monitored by TLC. The formed crude products were filtered, washed successively with distilled water and recrystallized from ethanol to get the title chalcone. Crystals suitable for X-ray diffraction studies were obtained from acetone solution by slow evaporation at room temperature. The melting point (371–373 K) was determined by a Stuart Scientific (UK) apparatus. The purity of the compound was confirmed by thin layer chromatography using Merck silica gel 60 F254 coated aluminum plates.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. C-bound H atoms were positioned geometrically and refined using a riding model, with C—H = 0.93 Å and U iso(H) = 1.2U eq(C) for C—H and C—H = 0.96 Å and Uiso(H) = 1.5U eq(C) for methyl H atoms.
Table 3

Experimental details

Crystal data
Chemical formulaC17H15ClO3
M r 302.74
Crystal system, space groupMonoclinic, P21/n
Temperature (K)294
a, b, c (Å)9.0491 (4), 8.3257 (4), 20.2857 (9)
β (°)99.484 (1)
V3)1507.44 (12)
Z 4
Radiation typeMo Kα
μ (mm−1)0.26
Crystal size (mm)0.40 × 0.24 × 0.19
 
Data collection
DiffractometerBruker APEXII CCD
No. of measured, independent and observed [I > 2σ(I)] reflections39332, 5506, 3732
R int 0.036
(sin θ/λ)max−1)0.758
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.049, 0.158, 1.01
No. of reflections5506
No. of parameters190
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.31, −0.43

Computer programs: APEX2 and SAINT (Bruker, 2007 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸).

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S205698901800837X/xu5927sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901800837X/xu5927Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901800837X/xu5927Isup3.cml CCDC reference: 1847705 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H15ClO3F(000) = 632
Mr = 302.74Dx = 1.334 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 8862 reflections
a = 9.0491 (4) Åθ = 2.7–30.8°
b = 8.3257 (4) ŵ = 0.26 mm1
c = 20.2857 (9) ÅT = 294 K
β = 99.484 (1)°Block, yellow
V = 1507.44 (12) Å30.40 × 0.24 × 0.19 mm
Z = 4
Bruker APEXII CCD diffractometerRint = 0.036
φ and ω scansθmax = 32.6°, θmin = 2.0°
39332 measured reflectionsh = −13→13
5506 independent reflectionsk = −12→12
3732 reflections with I > 2σ(I)l = −30→30
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.158w = 1/[σ2(Fo2) + (0.0758P)2 + 0.3034P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.001
5506 reflectionsΔρmax = 0.31 e Å3
190 parametersΔρmin = −0.43 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > 2sigma(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.02901 (5)1.02517 (6)0.15452 (2)0.0710 (2)
O11.07019 (12)0.65283 (15)0.35402 (5)0.0576 (3)
O21.13649 (12)0.52216 (16)0.24887 (6)0.0634 (4)
O30.67255 (12)0.57110 (17)0.07167 (5)0.0632 (4)
C10.72153 (15)0.73479 (17)0.23869 (7)0.0458 (4)
C20.82535 (15)0.73642 (17)0.29717 (7)0.0463 (4)
C30.96267 (14)0.66310 (15)0.29901 (6)0.0420 (3)
C40.99836 (14)0.59071 (16)0.24086 (6)0.0415 (3)
C50.89499 (14)0.59023 (15)0.18335 (6)0.0405 (3)
C60.75372 (13)0.66142 (14)0.18154 (6)0.0394 (3)
C70.64331 (14)0.64884 (17)0.11929 (7)0.0444 (4)
C80.49469 (15)0.72588 (18)0.11575 (7)0.0495 (4)
C90.38379 (15)0.69300 (18)0.06640 (6)0.0452 (4)
C100.22936 (14)0.75164 (16)0.05882 (6)0.0424 (3)
C110.12555 (17)0.69543 (19)0.00574 (7)0.0525 (4)
C12−0.02283 (18)0.7421 (2)−0.00148 (8)0.0610 (5)
C13−0.07040 (16)0.8446 (2)0.04383 (8)0.0564 (5)
C140.03261 (16)0.90063 (17)0.09633 (7)0.0470 (4)
C150.18120 (15)0.85720 (16)0.10468 (7)0.0447 (3)
C161.0326 (2)0.7046 (3)0.41599 (8)0.0826 (7)
C171.1814 (2)0.4431 (2)0.19409 (9)0.0669 (6)
H1A0.628880.783750.237880.0550*
H2A0.802420.786890.335120.0560*
H5A0.918670.542160.145040.0490*
H8A0.479000.798540.148720.0590*
H9A0.406420.625390.032950.0540*
H11A0.156120.62577−0.025230.0630*
H12A−0.091130.70376−0.037340.0730*
H13A−0.170360.875450.039110.0680*
H15A0.248860.897460.140350.0540*
H16A1.117640.691300.450690.1240*
H16B1.004320.815870.412820.1240*
H16C0.950440.641750.426280.1240*
H17A1.280640.400960.207050.1000*
H17B1.113300.356690.179880.1000*
H17C1.180730.517780.157990.1000*
U11U22U33U12U13U23
Cl10.0650 (3)0.0704 (3)0.0809 (3)0.0083 (2)0.0216 (2)−0.0176 (2)
O10.0518 (6)0.0735 (7)0.0440 (5)0.0124 (5)−0.0028 (4)−0.0031 (5)
O20.0487 (6)0.0881 (8)0.0518 (6)0.0278 (5)0.0039 (4)−0.0044 (5)
O30.0479 (6)0.0898 (8)0.0505 (6)0.0088 (5)0.0038 (4)−0.0226 (6)
C10.0400 (6)0.0500 (7)0.0472 (7)0.0080 (5)0.0064 (5)−0.0052 (5)
C20.0462 (7)0.0506 (7)0.0420 (6)0.0063 (5)0.0074 (5)−0.0069 (5)
C30.0425 (6)0.0424 (6)0.0398 (6)0.0012 (5)0.0028 (5)0.0021 (5)
C40.0382 (6)0.0423 (6)0.0441 (6)0.0057 (5)0.0073 (5)0.0033 (5)
C50.0404 (6)0.0425 (6)0.0396 (6)0.0032 (5)0.0093 (5)−0.0010 (5)
C60.0382 (6)0.0393 (5)0.0403 (6)0.0007 (4)0.0057 (4)−0.0005 (4)
C70.0384 (6)0.0510 (7)0.0434 (6)0.0014 (5)0.0055 (5)−0.0046 (5)
C80.0426 (6)0.0562 (8)0.0476 (7)0.0070 (6)0.0014 (5)−0.0090 (6)
C90.0424 (6)0.0539 (7)0.0388 (6)0.0028 (5)0.0050 (5)−0.0017 (5)
C100.0401 (6)0.0469 (6)0.0384 (6)−0.0001 (5)0.0011 (5)0.0006 (5)
C110.0493 (7)0.0603 (8)0.0449 (7)0.0006 (6)−0.0014 (6)−0.0093 (6)
C120.0468 (8)0.0733 (10)0.0568 (8)−0.0030 (7)−0.0092 (6)−0.0092 (7)
C130.0379 (6)0.0642 (9)0.0643 (9)0.0002 (6)−0.0002 (6)0.0022 (7)
C140.0452 (7)0.0445 (6)0.0519 (7)−0.0005 (5)0.0094 (5)0.0004 (5)
C150.0419 (6)0.0476 (6)0.0427 (6)−0.0022 (5)0.0016 (5)−0.0030 (5)
C160.0814 (12)0.1149 (17)0.0452 (8)0.0267 (12)−0.0080 (8)−0.0161 (10)
C170.0583 (9)0.0781 (11)0.0673 (10)0.0238 (8)0.0189 (8)−0.0001 (8)
Cl1—C141.7310 (15)C12—C131.374 (2)
O1—C31.3570 (16)C13—C141.376 (2)
O1—C161.422 (2)C14—C151.376 (2)
O2—C41.3593 (17)C1—H1A0.9300
O2—C171.408 (2)C2—H2A0.9300
O3—C71.2273 (18)C5—H5A0.9300
C1—C21.387 (2)C8—H8A0.9300
C1—C61.3832 (18)C9—H9A0.9300
C2—C31.3794 (19)C11—H11A0.9300
C3—C41.4088 (17)C12—H12A0.9300
C4—C51.3698 (17)C13—H13A0.9300
C5—C61.4041 (17)C15—H15A0.9300
C6—C71.4792 (18)C16—H16A0.9600
C7—C81.4810 (19)C16—H16B0.9600
C8—C91.3241 (19)C16—H16C0.9600
C9—C101.4643 (19)C17—H17A0.9600
C10—C111.3884 (19)C17—H17B0.9600
C10—C151.4005 (19)C17—H17C0.9600
C11—C121.382 (2)
C3—O1—C16117.66 (12)C6—C1—H1A120.00
C4—O2—C17118.77 (12)C1—C2—H2A120.00
C2—C1—C6120.98 (13)C3—C2—H2A120.00
C1—C2—C3119.94 (13)C4—C5—H5A120.00
O1—C3—C2124.80 (12)C6—C5—H5A120.00
O1—C3—C4115.43 (11)C7—C8—H8A119.00
C2—C3—C4119.77 (12)C9—C8—H8A119.00
O2—C4—C3114.38 (11)C8—C9—H9A116.00
O2—C4—C5125.88 (12)C10—C9—H9A117.00
C3—C4—C5119.72 (12)C10—C11—H11A120.00
C4—C5—C6120.80 (11)C12—C11—H11A120.00
C1—C6—C5118.76 (11)C11—C12—H12A120.00
C1—C6—C7122.74 (11)C13—C12—H12A120.00
C5—C6—C7118.45 (11)C12—C13—H13A121.00
O3—C7—C6120.42 (12)C14—C13—H13A121.00
O3—C7—C8120.14 (13)C10—C15—H15A120.00
C6—C7—C8119.40 (12)C14—C15—H15A120.00
C7—C8—C9121.08 (13)O1—C16—H16A109.00
C8—C9—C10127.00 (13)O1—C16—H16B109.00
C9—C10—C11118.76 (12)O1—C16—H16C109.00
C9—C10—C15122.38 (12)H16A—C16—H16B109.00
C11—C10—C15118.81 (12)H16A—C16—H16C109.00
C10—C11—C12120.58 (14)H16B—C16—H16C109.00
C11—C12—C13120.63 (15)O2—C17—H17A109.00
C12—C13—C14118.77 (14)O2—C17—H17B109.00
Cl1—C14—C13118.53 (11)O2—C17—H17C109.00
Cl1—C14—C15119.45 (11)H17A—C17—H17B109.00
C13—C14—C15122.00 (13)H17A—C17—H17C110.00
C10—C15—C14119.21 (13)H17B—C17—H17C109.00
C2—C1—H1A120.00
C16—O1—C3—C27.7 (2)C1—C6—C7—C83.84 (19)
C16—O1—C3—C4−171.77 (15)C5—C6—C7—O33.5 (2)
C17—O2—C4—C3178.44 (13)C5—C6—C7—C8−178.75 (12)
C17—O2—C4—C50.3 (2)O3—C7—C8—C910.5 (2)
C6—C1—C2—C3−0.5 (2)C6—C7—C8—C9−167.28 (13)
C2—C1—C6—C5−1.0 (2)C7—C8—C9—C10175.76 (13)
C2—C1—C6—C7176.44 (13)C8—C9—C10—C11−175.75 (15)
C1—C2—C3—O1−177.65 (13)C8—C9—C10—C151.6 (2)
C1—C2—C3—C41.8 (2)C9—C10—C11—C12177.04 (14)
O1—C3—C4—O2−0.40 (17)C15—C10—C11—C12−0.4 (2)
O1—C3—C4—C5177.86 (12)C9—C10—C15—C14−176.57 (13)
C2—C3—C4—O2−179.87 (12)C11—C10—C15—C140.8 (2)
C2—C3—C4—C5−1.60 (19)C10—C11—C12—C13−0.2 (2)
O2—C4—C5—C6178.20 (13)C11—C12—C13—C140.4 (2)
C3—C4—C5—C60.2 (2)C12—C13—C14—Cl1−178.21 (12)
C4—C5—C6—C11.13 (19)C12—C13—C14—C150.0 (2)
C4—C5—C6—C7−176.39 (12)Cl1—C14—C15—C10177.64 (10)
C1—C6—C7—O3−173.88 (14)C13—C14—C15—C10−0.6 (2)
D—H···AD—HH···AD···AD—H···A
C9—H9A···O30.932.452.7888 (18)102
C11—H11A···O3i0.932.543.417 (2)157
C15—H15A···O2ii0.932.543.4378 (18)163
  6 in total

1.  Towards quantitative analysis of intermolecular interactions with Hirshfeld surfaces.

Authors:  Joshua J McKinnon; Dylan Jayatilaka; Mark A Spackman
Journal:  Chem Commun (Camb)       Date:  2007-10-07       Impact factor: 6.222

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  (E)-3-(2-Bromo-phen-yl)-1-(3,4-dimeth-oxy-phen-yl)prop-2-en-1-one.

Authors:  Zhe Li; Yanan Wang; Kesong Peng; Lingzi Chen; Shenghui Chu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-17

4.  (E)-1-(3-Bromo-phen-yl)-3-(3,4-dimeth-oxy-phen-yl)prop-2-en-1-one.

Authors:  Carlos A Escobar; Alexander Trujillo; Judith A K Howard; Mauricio Fuentealba
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-29

5.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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