| Literature DB >> 30002884 |
Cong Nguyen Tien1, Huong Le Thi Thu1, Thin Nguyen Van2, Trung Vu Quoc3, Manh Vu Quoc4, Thang Pham Chien5, Luc Van Meervelt6.
Abstract
In the title compound, C15H14IN3O2·CH3OH, two aromatic rings are linked by an N-substituted hydrazide function. The dihedral angle between the aromatic rings is 10.53 (8)°. The stereochemistry about the imine function is E. The methanol mol-ecule forms an O-H⋯O hydrogen bond to the hydrazide O atom. In the crystal, chains of mol-ecules running along the c-axis direction are formed by O-H⋯O hydrogen bonds. Adjacent chains are linked through N-H⋯O hydrogen bonds and π-π stacking inter-actions. The inter-molecular inter-actions in the crystal packing were investigated using Hirshfeld surface analysis, which indicated that the most significant contacts are H⋯H (38.2%), followed by C⋯H/H⋯C (20.6%), O⋯H/H⋯O (11.1%) and I⋯H/H⋯I (9.7%).Entities:
Keywords: Hirshfeld surface; N-substituted hydrazide; crystal structure; salicylic acid
Year: 2018 PMID: 30002884 PMCID: PMC6038649 DOI: 10.1107/S2056989018008204
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1View of the asymmetric unit of the title compound, showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are shown as small circles of arbitrary radii. Intra- and intermolecular hydrogen bonds are shown as dashed lines.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O23—H23⋯O4 | 0.80 (2) | 1.97 (2) | 2.7561 (18) | 170 (3) |
| N2—H2⋯O11 | 0.82 (3) | 2.02 (2) | 2.665 (2) | 134.4 (19) |
| O11—H11⋯O23i | 0.76 (3) | 1.88 (3) | 2.6323 (18) | 172 (2) |
| N21—H21 | 0.85 (2) | 2.14 (2) | 2.961 (2) | 164 (2) |
Symmetry codes: (i) ; (ii) .
Figure 2Part of the crystal packing of the title compound, showing the chain along the c-axis direction formed by O—H⋯O hydrogen-bonding interactions [see Table 1 ▸; symmetry code: (i) x, y, z − 1]. Only the major component of the disordered methyl group C14 is shown.
Figure 3Ring of graph-set motif (22) formed by N—H⋯O hydrogen-bonding interactions [see Table 1 ▸; symmetry code: (i) x − 1, y − 1, z − 2].
Figure 4Part of the crystal packing of the title compound, showing the π–π stacking interactions between the aminophenyl (blue) and iodophenyl (yellow) rings [symmetry codes: (i) −x + 1, −y + 1, −z + 1; (ii) −x, −y + 1, −z + 1].
Figure 5Views of the Hirshfeld surface for the title compound mapped over d norm over the range −0.740 to 1.296 a.u. showing the closest methanol molecules.
Figure 6Two-dimensional fingerprint plots delineated into different contact types (a)–(d) for the title compound. Each blue dot represents a 0.01 Å bin of points on the Hirshfeld surface, with coordinates corresponding to distances (Å) from the points to the nearest interior (d i) and exterior (d e) nuclei. Increasing intensity of overlapping points is shown by a colour coding from blue to cyan. The grey background contours correspond to the plot integrated for all contact types.
Figure 7(a) The N-substituted hydrazide fragment used for a search in the CSD ( refers to acyclic). (b)–(d) Histograms of torsion angles tor1, tor2 and tor3, respectively.
Figure 8Reaction scheme for the title compound.
Experimental details
| Crystal data | |
| Chemical formula | C15H14IN3O2·CH4O |
|
| 427.23 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 12.9877 (10), 14.8982 (10), 8.5593 (6) |
| β (°) | 91.806 (2) |
|
| 1655.3 (2) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 1.95 |
| Crystal size (mm) | 0.41 × 0.27 × 0.22 |
| Data collection | |
| Diffractometer | Bruker D8 Quest CMOS |
| Absorption correction | Multi-scan ( |
|
| 0.613, 0.746 |
| No. of measured, independent and observed [ | 45415, 3394, 3086 |
|
| 0.044 |
| (sin θ/λ)max (Å−1) | 0.625 |
| Refinement | |
|
| 0.017, 0.041, 1.06 |
| No. of reflections | 3394 |
| No. of parameters | 231 |
| No. of restraints | 1 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.61, −0.24 |
Computer programs: APEX2 and SAINT (Bruker, 2013 ▸), SHELXS (Sheldrick, 2008 ▸), SHELXL2016 (Sheldrick, 2015 ▸) and OLEX2 (Dolomanov et al., 2009 ▸).
| C15H14IN3O2·CH4O | |
| Monoclinic, | Mo |
| Cell parameters from 9842 reflections | |
| θ = 3.1–30.5° | |
| µ = 1.95 mm−1 | |
| β = 91.806 (2)° | |
| Block, yellow | |
| 0.41 × 0.27 × 0.22 mm |
| Bruker D8 Quest CMOS diffractometer | 3086 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2014) | θmax = 26.4°, θmin = 3.1° |
| 45415 measured reflections | |
| 3394 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 3394 reflections | Δρmax = 0.61 e Å−3 |
| 231 parameters | Δρmin = −0.24 e Å−3 |
| 1 restraint |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Occ. (<1) | |||||
| N1 | 0.40946 (11) | 0.57600 (10) | 0.63743 (17) | 0.0163 (3) | |
| N2 | 0.33272 (11) | 0.55807 (10) | 0.52645 (18) | 0.0161 (3) | |
| H2 | 0.3379 (16) | 0.5699 (15) | 0.433 (3) | 0.023 (6)* | |
| C3 | 0.24587 (13) | 0.51777 (11) | 0.5728 (2) | 0.0148 (3) | |
| O4 | 0.22915 (10) | 0.50292 (9) | 0.71249 (14) | 0.0199 (3) | |
| C5 | 0.17050 (13) | 0.48847 (12) | 0.4474 (2) | 0.0140 (3) | |
| C6 | 0.16570 (13) | 0.52242 (11) | 0.2943 (2) | 0.0145 (3) | |
| C7 | 0.08776 (14) | 0.49318 (12) | 0.1909 (2) | 0.0170 (4) | |
| H7 | 0.081025 | 0.519641 | 0.090110 | 0.020* | |
| C8 | 0.01991 (14) | 0.42619 (12) | 0.2326 (2) | 0.0172 (4) | |
| H8 | −0.031928 | 0.405794 | 0.160228 | 0.021* | |
| C9 | 0.02861 (13) | 0.38912 (12) | 0.3817 (2) | 0.0150 (3) | |
| C10 | 0.10096 (13) | 0.42151 (12) | 0.48894 (19) | 0.0147 (3) | |
| H10 | 0.103575 | 0.398069 | 0.592210 | 0.018* | |
| O11 | 0.23620 (10) | 0.58419 (9) | 0.25082 (15) | 0.0182 (3) | |
| H11 | 0.233 (2) | 0.5920 (18) | 0.163 (3) | 0.042 (8)* | |
| I12 | −0.06829 (2) | 0.28322 (2) | 0.44470 (2) | 0.01876 (5) | |
| C13 | 0.49324 (13) | 0.61305 (12) | 0.5921 (2) | 0.0151 (3) | |
| C14 | 0.51380 (15) | 0.64301 (14) | 0.4276 (2) | 0.0217 (4) | |
| H14A | 0.454135 | 0.628694 | 0.359179 | 0.033* | 0.66 (2) |
| H14B | 0.574751 | 0.611872 | 0.390192 | 0.033* | 0.66 (2) |
| H14C | 0.525871 | 0.707940 | 0.426604 | 0.033* | 0.66 (2) |
| H14D | 0.506928 | 0.591666 | 0.356473 | 0.033* | 0.34 (2) |
| H14E | 0.583785 | 0.667320 | 0.423635 | 0.033* | 0.34 (2) |
| H14F | 0.464045 | 0.689520 | 0.395866 | 0.033* | 0.34 (2) |
| C15 | 0.57516 (13) | 0.62386 (12) | 0.7151 (2) | 0.0151 (3) | |
| C16 | 0.56846 (14) | 0.57802 (13) | 0.8582 (2) | 0.0187 (4) | |
| H16 | 0.510394 | 0.540934 | 0.875386 | 0.022* | |
| C17 | 0.64415 (14) | 0.58565 (12) | 0.9740 (2) | 0.0183 (4) | |
| H17 | 0.637198 | 0.554354 | 1.069845 | 0.022* | |
| C18 | 0.73134 (13) | 0.63918 (12) | 0.9518 (2) | 0.0156 (3) | |
| C19 | 0.73773 (14) | 0.68645 (12) | 0.8117 (2) | 0.0176 (4) | |
| H19 | 0.795006 | 0.724630 | 0.795497 | 0.021* | |
| C20 | 0.66115 (14) | 0.67820 (12) | 0.6957 (2) | 0.0175 (4) | |
| H20 | 0.667530 | 0.710410 | 0.600736 | 0.021* | |
| N21 | 0.80719 (13) | 0.64660 (12) | 1.06816 (19) | 0.0195 (3) | |
| H21A | 0.8080 (17) | 0.6075 (16) | 1.140 (3) | 0.025 (6)* | |
| H21B | 0.8644 (19) | 0.6701 (16) | 1.040 (3) | 0.028 (6)* | |
| C22 | 0.31350 (17) | 0.69396 (14) | 0.9344 (3) | 0.0285 (5) | |
| H22A | 0.294430 | 0.732318 | 0.845110 | 0.043* | |
| H22B | 0.380013 | 0.665329 | 0.916393 | 0.043* | |
| H22C | 0.318802 | 0.730503 | 1.029528 | 0.043* | |
| O23 | 0.23658 (11) | 0.62647 (9) | 0.95224 (15) | 0.0213 (3) | |
| H23 | 0.242 (2) | 0.5898 (15) | 0.885 (3) | 0.040 (8)* |
| N1 | 0.0147 (7) | 0.0195 (8) | 0.0143 (7) | −0.0010 (6) | −0.0037 (6) | −0.0009 (6) |
| N2 | 0.0166 (8) | 0.0217 (8) | 0.0096 (7) | −0.0024 (6) | −0.0033 (6) | 0.0005 (6) |
| C3 | 0.0170 (9) | 0.0125 (8) | 0.0147 (8) | 0.0020 (7) | −0.0012 (7) | −0.0008 (7) |
| O4 | 0.0229 (7) | 0.0257 (7) | 0.0109 (6) | −0.0068 (5) | −0.0023 (5) | 0.0014 (5) |
| C5 | 0.0140 (8) | 0.0150 (8) | 0.0128 (8) | 0.0023 (7) | −0.0015 (6) | −0.0025 (7) |
| C6 | 0.0163 (8) | 0.0131 (8) | 0.0142 (8) | 0.0010 (7) | 0.0009 (7) | −0.0009 (7) |
| C7 | 0.0216 (9) | 0.0175 (9) | 0.0117 (8) | 0.0021 (7) | −0.0031 (7) | 0.0013 (7) |
| C8 | 0.0166 (9) | 0.0193 (9) | 0.0154 (8) | 0.0010 (7) | −0.0048 (7) | −0.0025 (7) |
| C9 | 0.0135 (8) | 0.0141 (8) | 0.0175 (9) | 0.0002 (7) | 0.0009 (7) | −0.0018 (7) |
| C10 | 0.0166 (8) | 0.0155 (9) | 0.0118 (8) | 0.0031 (7) | −0.0001 (7) | 0.0004 (7) |
| O11 | 0.0225 (7) | 0.0215 (7) | 0.0104 (6) | −0.0055 (5) | −0.0012 (5) | 0.0029 (5) |
| I12 | 0.01767 (7) | 0.01657 (7) | 0.02193 (7) | −0.00289 (4) | −0.00078 (4) | 0.00057 (5) |
| C13 | 0.0166 (9) | 0.0131 (8) | 0.0155 (8) | 0.0020 (7) | 0.0000 (7) | −0.0006 (7) |
| C14 | 0.0206 (9) | 0.0279 (10) | 0.0166 (9) | −0.0017 (8) | −0.0009 (7) | 0.0053 (8) |
| C15 | 0.0143 (8) | 0.0154 (8) | 0.0155 (8) | 0.0018 (7) | 0.0000 (7) | −0.0009 (7) |
| C16 | 0.0154 (9) | 0.0216 (9) | 0.0190 (9) | −0.0051 (7) | 0.0002 (7) | 0.0021 (7) |
| C17 | 0.0180 (9) | 0.0210 (9) | 0.0160 (8) | −0.0022 (7) | 0.0009 (7) | 0.0026 (7) |
| C18 | 0.0149 (8) | 0.0157 (9) | 0.0162 (8) | 0.0027 (7) | −0.0006 (7) | −0.0050 (7) |
| C19 | 0.0150 (9) | 0.0169 (9) | 0.0210 (9) | −0.0027 (7) | 0.0012 (7) | 0.0005 (7) |
| C20 | 0.0187 (9) | 0.0172 (9) | 0.0168 (9) | 0.0007 (7) | 0.0022 (7) | 0.0017 (7) |
| N21 | 0.0170 (8) | 0.0230 (9) | 0.0182 (8) | −0.0038 (7) | −0.0019 (6) | 0.0006 (7) |
| C22 | 0.0291 (11) | 0.0251 (10) | 0.0318 (11) | −0.0050 (9) | 0.0107 (9) | −0.0034 (9) |
| O23 | 0.0277 (7) | 0.0223 (7) | 0.0140 (6) | −0.0043 (6) | 0.0014 (5) | −0.0005 (6) |
| N1—N2 | 1.381 (2) | C14—H14C | 0.9800 |
| N1—C13 | 1.291 (2) | C14—H14D | 0.9800 |
| N2—H2 | 0.82 (2) | C14—H14E | 0.9800 |
| N2—C3 | 1.349 (2) | C14—H14F | 0.9800 |
| C3—O4 | 1.242 (2) | C15—C16 | 1.407 (2) |
| C3—C5 | 1.495 (2) | C15—C20 | 1.394 (3) |
| C5—C6 | 1.404 (2) | C16—H16 | 0.9500 |
| C5—C10 | 1.399 (2) | C16—C17 | 1.379 (3) |
| C6—C7 | 1.394 (2) | C17—H17 | 0.9500 |
| C6—O11 | 1.359 (2) | C17—C18 | 1.403 (3) |
| C7—H7 | 0.9500 | C18—C19 | 1.396 (3) |
| C7—C8 | 1.386 (3) | C18—N21 | 1.383 (2) |
| C8—H8 | 0.9500 | C19—H19 | 0.9500 |
| C8—C9 | 1.392 (2) | C19—C20 | 1.388 (3) |
| C9—C10 | 1.380 (2) | C20—H20 | 0.9500 |
| C9—I12 | 2.0993 (17) | N21—H21A | 0.85 (2) |
| C10—H10 | 0.9500 | N21—H21B | 0.86 (2) |
| O11—H11 | 0.76 (3) | C22—H22A | 0.9800 |
| C13—C14 | 1.509 (2) | C22—H22B | 0.9800 |
| C13—C15 | 1.482 (2) | C22—H22C | 0.9800 |
| C14—H14A | 0.9800 | C22—O23 | 1.429 (2) |
| C14—H14B | 0.9800 | O23—H23 | 0.800 (16) |
| C13—N1—N2 | 118.21 (15) | C13—C14—H14A | 109.5 |
| N1—N2—H2 | 123.2 (15) | C13—C14—H14B | 109.5 |
| C3—N2—N1 | 118.42 (15) | C13—C14—H14C | 109.5 |
| C3—N2—H2 | 118.4 (15) | C13—C14—H14D | 109.5 |
| N2—C3—C5 | 116.98 (15) | C13—C14—H14E | 109.5 |
| O4—C3—N2 | 122.40 (16) | C13—C14—H14F | 109.5 |
| O4—C3—C5 | 120.59 (16) | C16—C15—C13 | 120.20 (16) |
| C6—C5—C3 | 125.00 (16) | C20—C15—C13 | 122.59 (16) |
| C10—C5—C3 | 116.05 (15) | C20—C15—C16 | 117.21 (16) |
| C10—C5—C6 | 118.94 (16) | C15—C16—H16 | 119.2 |
| H14Aa—C14—H14B | 109.5 | C17—C16—C15 | 121.57 (17) |
| H14Ba—C14—H14C | 109.5 | C17—C16—H16 | 119.2 |
| H14Aa—C14—H14C | 109.5 | C16—C17—H17 | 119.7 |
| H14Db—C14—H14E | 109.5 | C16—C17—C18 | 120.63 (17) |
| H14Eb—C14—H14F | 109.5 | C18—C17—H17 | 119.7 |
| H14Db—C14—H14F | 109.5 | C19—C18—C17 | 118.27 (16) |
| C7—C6—C5 | 119.36 (16) | N21—C18—C17 | 120.49 (17) |
| O11—C6—C5 | 119.30 (15) | N21—C18—C19 | 121.22 (17) |
| O11—C6—C7 | 121.33 (16) | C18—C19—H19 | 119.7 |
| C6—C7—H7 | 119.4 | C20—C19—C18 | 120.60 (17) |
| C8—C7—C6 | 121.12 (16) | C20—C19—H19 | 119.7 |
| C8—C7—H7 | 119.4 | C15—C20—H20 | 119.2 |
| C7—C8—H8 | 120.4 | C19—C20—C15 | 121.68 (17) |
| C7—C8—C9 | 119.19 (16) | C19—C20—H20 | 119.2 |
| C9—C8—H8 | 120.4 | C18—N21—H21A | 117.5 (16) |
| C8—C9—I12 | 120.11 (13) | C18—N21—H21B | 115.7 (15) |
| C10—C9—C8 | 120.35 (16) | H21A—N21—H21B | 119 (2) |
| C10—C9—I12 | 119.54 (13) | H22A—C22—H22B | 109.5 |
| C5—C10—H10 | 119.6 | H22A—C22—H22C | 109.5 |
| C9—C10—C5 | 120.78 (16) | H22B—C22—H22C | 109.5 |
| C9—C10—H10 | 119.6 | O23—C22—H22A | 109.5 |
| C6—O11—H11 | 111 (2) | O23—C22—H22B | 109.5 |
| N1—C13—C14 | 125.66 (16) | O23—C22—H22C | 109.5 |
| N1—C13—C15 | 115.19 (15) | C22—O23—H23 | 109.2 (19) |
| C15—C13—C14 | 119.13 (15) | ||
| N1—N2—C3—O4 | 5.9 (3) | C8—C9—C10—C5 | −3.6 (3) |
| N1—N2—C3—C5 | −172.18 (15) | C10—C5—C6—C7 | 4.3 (3) |
| N1—C13—C15—C16 | 13.9 (2) | C10—C5—C6—O11 | −176.74 (15) |
| N1—C13—C15—C20 | −166.49 (17) | O11—C6—C7—C8 | 175.98 (16) |
| N2—N1—C13—C14 | 3.0 (3) | I12—C9—C10—C5 | 176.29 (13) |
| N2—N1—C13—C15 | −175.48 (15) | C13—N1—N2—C3 | 178.71 (16) |
| N2—C3—C5—C6 | −20.8 (3) | C13—C15—C16—C17 | 179.02 (17) |
| N2—C3—C5—C10 | 158.64 (16) | C13—C15—C20—C19 | −179.11 (17) |
| C3—C5—C6—C7 | −176.25 (16) | C14—C13—C15—C16 | −164.75 (17) |
| C3—C5—C6—O11 | 2.7 (3) | C14—C13—C15—C20 | 14.9 (3) |
| C3—C5—C10—C9 | −179.52 (15) | C15—C16—C17—C18 | −0.6 (3) |
| O4—C3—C5—C6 | 161.03 (17) | C16—C15—C20—C19 | 0.6 (3) |
| O4—C3—C5—C10 | −19.5 (2) | C16—C17—C18—C19 | 1.9 (3) |
| C5—C6—C7—C8 | −5.1 (3) | C16—C17—C18—N21 | −179.92 (17) |
| C6—C5—C10—C9 | 0.0 (3) | C17—C18—C19—C20 | −2.0 (3) |
| C6—C7—C8—C9 | 1.5 (3) | C18—C19—C20—C15 | 0.8 (3) |
| C7—C8—C9—C10 | 2.9 (3) | C20—C15—C16—C17 | −0.6 (3) |
| C7—C8—C9—I12 | −177.01 (13) | N21—C18—C19—C20 | 179.84 (17) |
| H··· | ||||
| O23—H23···O4 | 0.80 (2) | 1.97 (2) | 2.7561 (18) | 170 (3) |
| N2—H2···O11 | 0.82 (3) | 2.02 (2) | 2.665 (2) | 134.4 (19) |
| O11—H11···O23i | 0.76 (3) | 1.88 (3) | 2.6323 (18) | 172 (2) |
| N21—H21 | 0.85 (2) | 2.14 (2) | 2.961 (2) | 164 (2) |