| Literature DB >> 30002879 |
Nabila Moussa Slimane1, Zakaria Bouhidel1, Aouatef Cherouana1.
Abstract
The title Schiff base compound, C15H13NO2, crystallizes in a new crystal form in the space group P212121, which is different from the monoclinic P21/n space group reported previously [De et al. (2009 ▸). Indian J. Chem. Sect. B, 48, 595-598]. An intra-molecular O-H⋯N hydrogen bond occurs between the hy-droxy and azomethine moieties. In the crystal, mol-ecules are linked by weak C-H⋯O hydrogen bonds into supra-molecular chains propagating along the b-axis direction with a C(8) graph-set motif. The contribution of these two contacts in Hirshfeld surface area are around 19 and 21%, respectively. The title compound was screened for its anti-bacterial activity against two gram-negative (Escherichia coli and Salmonella typhimurium) and one gram-positive (Staphyloccus aureus) bacteria. The results of this study reveal that this Schiff base shows good activity against only one bacterium, i.e. Salmonella typhimurium.Entities:
Keywords: Hirshfeld surfaces; Schiff base; antimicrobial activity; crystal structure; new crystal form
Year: 2018 PMID: 30002879 PMCID: PMC6038618 DOI: 10.1107/S205698901800806X
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1View of the title compound with the atom-numbering scheme. Displacement ellipsoids for non-H atoms are drawn at the 50% probability level.
Selected geometric parameters (Å, °)
| O1—C9 | 1.349 (3) | N1—C1 | 1.415 (3) |
| O2—C14 | 1.213 (3) | N1—C7 | 1.293 (3) |
| C1—N1—C7 | 121.25 (18) | O1—C9—C10 | 119.10 (19) |
| N1—C1—C2 | 115.86 (19) | O1—C9—C8 | 121.3 (2) |
| N1—C1—C6 | 125.3 (2) | O2—C14—C15 | 120.9 (2) |
| N1—C7—C8 | 120.8 (2) | O2—C14—C3 | 120.5 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯N1 | 0.84 | 1.84 | 2.590 (2) | 148 |
| C7—H7⋯O2i | 0.95 | 2.40 | 3.321 (3) | 162 |
Symmetry code: (i) .
Figure 2C—H⋯O hydrogen bonds (Table 1 ▸) in the title compound.
Figure 3π–π interaction between a benzene ring and the C=N double bond.
Figure 4Hirshfeld surface of the title compound mapped over d norm (−0.60 to 0.90 a.u.).
Figure 5Relative contributions of various interactions to the Hirshfeld surface area.
Figure 6Two-dimensional fingerprints of the compound, showing all interactions and H⋯H, C⋯H, O⋯H, C⋯C and C⋯N contacts.
Figure 7MICs (minimum inhibitory concentrations) antibacterial activity of the title compound and the standard Cefotaxime
Experimental details
| Crystal data | |
| Chemical formula | C15H13NO2 |
|
| 239.26 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 100 |
|
| 4.8637 (3), 14.6601 (10), 16.6512 (9) |
|
| 1187.27 (13) |
|
| 4 |
| Radiation type | Cu |
| μ (mm−1) | 0.72 |
| Crystal size (mm) | 0.1 × 0.1 × 0.08 |
| Data collection | |
| Diffractometer | Oxford Diffraction Xcalibur Sapphire2 CCD |
| Absorption correction | Integration ( |
|
| 0.966, 0.991 |
| No. of measured, independent and observed [ | 10738, 2461, 2222 |
|
| 0.058 |
| (sin θ/λ)max (Å−1) | 0.632 |
| Refinement | |
|
| 0.046, 0.131, 1.07 |
| No. of reflections | 2461 |
| No. of parameters | 163 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.33, −0.36 |
| Absolute structure | Flack |
| Absolute structure parameter | 0.00 (19) |
Computer programs: CrysAlis PRO (Rigaku OD, 2015 ▸), SIR2004 (Burla et al., 2005 ▸), SHELXL (Sheldrick, 2015 ▸) and OLEX2 (Dolomanov et al., 2009 ▸).
| C15H13NO2 | |
| Orthorhombic, | Cu |
| Hall symbol: P 2ac 2ab | Cell parameters from 10738 reflections |
| θ = 4.0–77.0° | |
| µ = 0.72 mm−1 | |
| Prism, yellow | |
| 0.1 × 0.1 × 0.08 mm |
| Oxford Diffraction Xcalibur Sapphire2 CCD diffractometer | 2461 independent reflections |
| Radiation source: fine-focus sealed tube | 2222 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 77.0°, θmin = 4.0° |
| Absorption correction: integration (ABSORB; DeTitta, 1985) | |
| 10738 measured reflections |
| Refinement on | H-atom parameters constrained |
| Least-squares matrix: full | |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.33 e Å−3 | |
| Δρmin = −0.36 e Å−3 | |
| 2461 reflections | Absolute structure: Flack |
| 163 parameters | Absolute structure parameter: 0.00 (19) |
| 0 restraints |
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| O1 | −0.2016 (4) | 0.05562 (11) | 0.50631 (9) | 0.0218 (4) | |
| O2 | 0.9481 (4) | 0.29985 (14) | 0.27572 (12) | 0.0356 (6) | |
| N1 | 0.0723 (4) | 0.03478 (13) | 0.37418 (10) | 0.0173 (5) | |
| C1 | 0.2784 (5) | 0.06549 (15) | 0.32063 (12) | 0.0175 (6) | |
| C2 | 0.4217 (5) | 0.14349 (16) | 0.34432 (13) | 0.0202 (6) | |
| C3 | 0.6303 (5) | 0.17989 (15) | 0.29616 (13) | 0.0201 (6) | |
| C4 | 0.6939 (5) | 0.13896 (17) | 0.22293 (13) | 0.0225 (6) | |
| C5 | 0.5530 (5) | 0.06016 (17) | 0.19957 (13) | 0.0233 (6) | |
| C6 | 0.3462 (5) | 0.02425 (17) | 0.24763 (13) | 0.0225 (7) | |
| C7 | −0.0656 (5) | −0.03891 (15) | 0.36008 (13) | 0.0183 (6) | |
| C8 | −0.2785 (5) | −0.06931 (15) | 0.41500 (13) | 0.0173 (6) | |
| C9 | −0.3394 (5) | −0.02099 (14) | 0.48639 (12) | 0.0174 (6) | |
| C10 | −0.5447 (5) | −0.05303 (15) | 0.53750 (13) | 0.0196 (6) | |
| C11 | −0.6896 (5) | −0.13149 (15) | 0.51850 (13) | 0.0203 (6) | |
| C12 | −0.6348 (5) | −0.17920 (15) | 0.44765 (14) | 0.0208 (6) | |
| C13 | −0.4307 (5) | −0.14870 (15) | 0.39705 (13) | 0.0199 (6) | |
| C14 | 0.7915 (5) | 0.26259 (16) | 0.32198 (15) | 0.0243 (7) | |
| C15 | 0.7613 (6) | 0.29571 (19) | 0.40716 (18) | 0.0354 (8) | |
| H1 | −0.08597 | 0.06773 | 0.47038 | 0.0326* | |
| H2 | 0.37706 | 0.17221 | 0.39377 | 0.0242* | |
| H4 | 0.83170 | 0.16435 | 0.18922 | 0.0270* | |
| H5 | 0.59906 | 0.03096 | 0.15045 | 0.0280* | |
| H6 | 0.25006 | −0.02878 | 0.23072 | 0.0270* | |
| H7 | −0.02712 | −0.07358 | 0.31321 | 0.0219* | |
| H10 | −0.58548 | −0.02092 | 0.58561 | 0.0235* | |
| H11 | −0.82777 | −0.15309 | 0.55406 | 0.0244* | |
| H12 | −0.73747 | −0.23226 | 0.43451 | 0.0250* | |
| H13 | −0.39171 | −0.18163 | 0.34925 | 0.0239* | |
| H15A | 0.62683 | 0.25763 | 0.43540 | 0.0531* | |
| H15B | 0.69811 | 0.35919 | 0.40695 | 0.0531* | |
| H15C | 0.93926 | 0.29186 | 0.43454 | 0.0531* |
| O1 | 0.0218 (8) | 0.0262 (8) | 0.0173 (7) | −0.0043 (6) | 0.0034 (6) | −0.0041 (6) |
| O2 | 0.0345 (11) | 0.0348 (10) | 0.0376 (10) | −0.0070 (8) | 0.0067 (9) | 0.0108 (8) |
| N1 | 0.0156 (9) | 0.0224 (9) | 0.0140 (8) | 0.0023 (7) | 0.0002 (7) | 0.0011 (7) |
| C1 | 0.0160 (10) | 0.0225 (10) | 0.0141 (10) | 0.0040 (9) | 0.0006 (8) | 0.0045 (8) |
| C2 | 0.0193 (11) | 0.0239 (11) | 0.0173 (10) | 0.0052 (9) | 0.0013 (9) | 0.0024 (8) |
| C3 | 0.0181 (12) | 0.0220 (10) | 0.0202 (10) | 0.0032 (8) | −0.0003 (8) | 0.0057 (8) |
| C4 | 0.0174 (11) | 0.0333 (12) | 0.0169 (10) | 0.0035 (10) | 0.0011 (9) | 0.0103 (9) |
| C5 | 0.0212 (12) | 0.0349 (12) | 0.0139 (9) | 0.0035 (10) | 0.0016 (9) | 0.0015 (9) |
| C6 | 0.0182 (12) | 0.0337 (12) | 0.0155 (10) | −0.0008 (10) | −0.0008 (8) | 0.0002 (9) |
| C7 | 0.0196 (11) | 0.0217 (10) | 0.0135 (9) | 0.0035 (9) | −0.0005 (9) | 0.0011 (8) |
| C8 | 0.0173 (11) | 0.0206 (10) | 0.0141 (10) | 0.0021 (8) | −0.0011 (8) | 0.0014 (8) |
| C9 | 0.0183 (11) | 0.0188 (9) | 0.0151 (9) | 0.0027 (8) | −0.0033 (8) | 0.0015 (8) |
| C10 | 0.0201 (11) | 0.0239 (10) | 0.0147 (9) | 0.0016 (9) | 0.0001 (8) | −0.0002 (8) |
| C11 | 0.0175 (10) | 0.0242 (10) | 0.0193 (10) | 0.0014 (9) | 0.0014 (9) | 0.0043 (8) |
| C12 | 0.0207 (12) | 0.0183 (10) | 0.0235 (11) | −0.0008 (8) | −0.0030 (9) | 0.0008 (8) |
| C13 | 0.0220 (12) | 0.0193 (10) | 0.0185 (10) | 0.0021 (9) | −0.0034 (9) | −0.0006 (8) |
| C14 | 0.0210 (12) | 0.0200 (10) | 0.0320 (12) | 0.0013 (9) | 0.0027 (10) | 0.0066 (9) |
| C15 | 0.0385 (16) | 0.0290 (12) | 0.0388 (15) | −0.0107 (11) | 0.0066 (12) | −0.0038 (11) |
| O1—C9 | 1.349 (3) | C10—C11 | 1.386 (3) |
| O2—C14 | 1.213 (3) | C11—C12 | 1.397 (3) |
| O1—H1 | 0.8400 | C12—C13 | 1.377 (3) |
| N1—C1 | 1.415 (3) | C14—C15 | 1.506 (4) |
| N1—C7 | 1.293 (3) | C2—H2 | 0.9500 |
| C1—C6 | 1.397 (3) | C4—H4 | 0.9500 |
| C1—C2 | 1.396 (3) | C5—H5 | 0.9500 |
| C2—C3 | 1.399 (3) | C6—H6 | 0.9500 |
| C3—C4 | 1.394 (3) | C7—H7 | 0.9500 |
| C3—C14 | 1.507 (3) | C10—H10 | 0.9500 |
| C4—C5 | 1.398 (3) | C11—H11 | 0.9500 |
| C5—C6 | 1.389 (3) | C12—H12 | 0.9500 |
| C7—C8 | 1.452 (3) | C13—H13 | 0.9500 |
| C8—C13 | 1.411 (3) | C15—H15A | 0.9800 |
| C8—C9 | 1.415 (3) | C15—H15B | 0.9800 |
| C9—C10 | 1.394 (3) | C15—H15C | 0.9800 |
| O1···N1 | 2.590 (2) | C5···H11ix | 2.9900 |
| O2···C7i | 3.321 (3) | C5···H10ix | 3.0200 |
| O1···H15Bii | 2.7200 | C6···H10ix | 2.9800 |
| O1···H5iii | 2.7600 | C6···H7 | 2.5600 |
| O2···H4 | 2.5200 | C7···H6 | 2.6500 |
| O2···H6i | 2.6900 | C7···H1 | 2.4100 |
| O2···H7i | 2.4000 | C9···H5iii | 2.9700 |
| N1···O1 | 2.590 (2) | C10···H5iii | 2.8900 |
| N1···C3iv | 3.292 (3) | C11···H12viii | 3.0700 |
| N1···H1 | 1.8400 | C12···H11viii | 2.8800 |
| C1···C3iv | 3.594 (3) | C12···H12viii | 3.0400 |
| C1···C4iv | 3.448 (3) | C13···H11viii | 3.0600 |
| C1···C7v | 3.599 (3) | C15···H2 | 2.6100 |
| C1···C8v | 3.320 (3) | H1···N1 | 1.8400 |
| C1···C9v | 3.561 (3) | H1···C1 | 3.0600 |
| C2···C9v | 3.572 (3) | H1···C7 | 2.4100 |
| C2···C14iv | 3.547 (3) | H2···C15 | 2.6100 |
| C3···N1v | 3.292 (3) | H2···H15A | 1.8800 |
| C3···C1v | 3.594 (3) | H4···O2 | 2.5200 |
| C4···C1v | 3.448 (3) | H4···H12x | 2.6000 |
| C5···C7v | 3.563 (3) | H5···O1xi | 2.7600 |
| C6···C7v | 3.542 (3) | H5···C9xi | 2.9700 |
| C7···C6iv | 3.542 (3) | H5···C10xi | 2.8900 |
| C7···C5iv | 3.563 (3) | H6···C7 | 2.6500 |
| C7···C11v | 3.485 (3) | H6···H7 | 2.0300 |
| C7···C13v | 3.536 (3) | H6···O2vi | 2.6900 |
| C7···C12v | 3.278 (3) | H7···C6 | 2.5600 |
| C7···O2vi | 3.321 (3) | H7···H6 | 2.0300 |
| C7···C1iv | 3.599 (3) | H7···H13 | 2.4500 |
| C8···C11v | 3.465 (3) | H7···O2vi | 2.4000 |
| C8···C1iv | 3.320 (3) | H10···C5xii | 3.0200 |
| C8···C12v | 3.563 (3) | H10···C6xii | 2.9800 |
| C9···C2iv | 3.572 (3) | H10···H15Bxiii | 2.6000 |
| C9···C11v | 3.591 (3) | H11···C5xii | 2.9900 |
| C9···C1iv | 3.561 (3) | H11···C12vii | 2.8800 |
| C11···C8iv | 3.465 (3) | H11···C13vii | 3.0600 |
| C11···C7iv | 3.485 (3) | H12···C11vii | 3.0700 |
| C11···C12vii | 3.565 (3) | H12···C12vii | 3.0400 |
| C11···C9iv | 3.591 (3) | H12···H4xiv | 2.6000 |
| C12···C11viii | 3.565 (3) | H13···H7 | 2.4500 |
| C12···C7iv | 3.278 (3) | H15A···C2 | 2.4700 |
| C12···C8iv | 3.563 (3) | H15A···H2 | 1.8800 |
| C13···C7iv | 3.536 (3) | H15A···H15Cii | 2.4600 |
| C14···C2v | 3.547 (3) | H15B···O1xv | 2.7200 |
| C1···H1 | 3.0600 | H15B···H10xvi | 2.6000 |
| C2···H15A | 2.4700 | H15C···H15Axv | 2.4600 |
| C9—O1—H1 | 109.00 | O2—C14—C3 | 120.5 (2) |
| C1—N1—C7 | 121.25 (18) | C1—C2—H2 | 120.00 |
| N1—C1—C2 | 115.86 (19) | C3—C2—H2 | 120.00 |
| N1—C1—C6 | 125.3 (2) | C3—C4—H4 | 120.00 |
| C2—C1—C6 | 118.9 (2) | C5—C4—H4 | 120.00 |
| C1—C2—C3 | 120.8 (2) | C4—C5—H5 | 120.00 |
| C2—C3—C4 | 119.9 (2) | C6—C5—H5 | 120.00 |
| C2—C3—C14 | 121.4 (2) | C1—C6—H6 | 120.00 |
| C4—C3—C14 | 118.7 (2) | C5—C6—H6 | 120.00 |
| C3—C4—C5 | 119.4 (2) | N1—C7—H7 | 120.00 |
| C4—C5—C6 | 120.5 (2) | C8—C7—H7 | 120.00 |
| C1—C6—C5 | 120.5 (2) | C9—C10—H10 | 120.00 |
| N1—C7—C8 | 120.8 (2) | C11—C10—H10 | 120.00 |
| C7—C8—C13 | 119.6 (2) | C10—C11—H11 | 120.00 |
| C9—C8—C13 | 118.7 (2) | C12—C11—H11 | 120.00 |
| C7—C8—C9 | 121.7 (2) | C11—C12—H12 | 120.00 |
| O1—C9—C10 | 119.10 (19) | C13—C12—H12 | 120.00 |
| C8—C9—C10 | 119.6 (2) | C8—C13—H13 | 119.00 |
| O1—C9—C8 | 121.3 (2) | C12—C13—H13 | 119.00 |
| C9—C10—C11 | 120.3 (2) | C14—C15—H15A | 109.00 |
| C10—C11—C12 | 120.8 (2) | C14—C15—H15B | 109.00 |
| C11—C12—C13 | 119.5 (2) | C14—C15—H15C | 109.00 |
| C8—C13—C12 | 121.1 (2) | H15A—C15—H15B | 109.00 |
| O2—C14—C15 | 120.9 (2) | H15A—C15—H15C | 109.00 |
| C3—C14—C15 | 118.5 (2) | H15B—C15—H15C | 109.00 |
| C7—N1—C1—C2 | −177.1 (2) | C3—C4—C5—C6 | 1.8 (4) |
| C7—N1—C1—C6 | 3.0 (3) | C4—C5—C6—C1 | −1.0 (4) |
| C1—N1—C7—C8 | −179.4 (2) | N1—C7—C8—C9 | −1.3 (3) |
| N1—C1—C2—C3 | 179.9 (2) | N1—C7—C8—C13 | 178.4 (2) |
| C6—C1—C2—C3 | −0.2 (3) | C7—C8—C9—O1 | 0.1 (3) |
| N1—C1—C6—C5 | −179.9 (2) | C7—C8—C9—C10 | −179.7 (2) |
| C2—C1—C6—C5 | 0.1 (4) | C13—C8—C9—O1 | −179.6 (2) |
| C1—C2—C3—C4 | 1.0 (4) | C13—C8—C9—C10 | 0.7 (3) |
| C1—C2—C3—C14 | −178.4 (2) | C7—C8—C13—C12 | −179.7 (2) |
| C2—C3—C4—C5 | −1.8 (3) | C9—C8—C13—C12 | −0.1 (3) |
| C14—C3—C4—C5 | 177.6 (2) | O1—C9—C10—C11 | 180.0 (2) |
| C2—C3—C14—O2 | −171.1 (2) | C8—C9—C10—C11 | −0.3 (3) |
| C2—C3—C14—C15 | 11.1 (3) | C9—C10—C11—C12 | −0.7 (3) |
| C4—C3—C14—O2 | 9.5 (4) | C10—C11—C12—C13 | 1.3 (4) |
| C4—C3—C14—C15 | −168.4 (2) | C11—C12—C13—C8 | −0.9 (3) |
| H··· | ||||
| O1—H1···N1 | 0.84 | 1.84 | 2.590 (2) | 148 |
| C7—H7···O2vi | 0.95 | 2.40 | 3.321 (3) | 162 |