| Literature DB >> 30002733 |
Jordan E Axelrad1,2, Benjamin Lebwohl2, Edward Cuaresma2, Ken Cadwell3,4, Peter H R Green2, Daniel E Freedberg2.
Abstract
BACKGROUND: Gut colonization with vancomycin-resistant Enterococcus (VRE) is associated with poor outcomes. This study evaluated the impact of VRE colonization on subsequent acquisition of enteric pathogens.Entities:
Keywords: Clostridium difficile; Enteric infection; Multiplex PCR testing; Vancomycin-resistant enterococci (VRE)
Year: 2018 PMID: 30002733 PMCID: PMC6038175 DOI: 10.1186/s13099-018-0259-4
Source DB: PubMed Journal: Gut Pathog ISSN: 1757-4749 Impact factor: 4.181
Baseline characteristics of patients with and without vancomycin resistant Enterococcus colonization who underwent testing with a gastrointestinal pathogen PCR panel or Clostridium difficile test
| Variable | Total (n = 761) | No VRE (n = 630, 82.8%) | VRE (n = 131, 17.2%) | p value |
|---|---|---|---|---|
| Sex | ||||
| Male | 387 (51%) | 330 (52%) | 57 (43.5%) | |
| Female | 374 (49%) | 300 (48%) | 74 (56.5%) | 0.07 |
| Race | ||||
| Asian | 31 (4.1%) | 27 (4.3%) | 4 (3.1%) | |
| Black | 89 (11%) | 77 (12%) | 12 (9.2%) | |
| White | 286 (38%) | 231 (37%) | 55 (42.0%) | |
| Other/unknown | 355 (47%) | 295 (47%) | 60 (45.8%) | 0.55 |
| Ethnicity | ||||
| Hispanic | 128 (17%) | 114 (18%) | 14 (10.7%) | |
| Non-hispanic | 280 (37%) | 220 (35%) | 60 (45.8%) | |
| Unknown | 353 (46%) | 296 (47%) | 57 (43.5%) |
|
| Age group | ||||
| 18–29 | 58 (7.6%) | 45 (7.1%) | 13 (9.9%) | |
| 30–49 | 137 (18%) | 115 (18%) | 22 (16.8%) | |
| 50–69 | 366 (48%) | 304 (48%) | 62 (47.3%) | |
| > 70 | 200 (26%) | 166 (26%) | 34 (26.0%) | 0.74 |
| Residential zip code | ||||
| New York city | 414 (54%) | 342 (54%) | 72 (55.0%) | |
| Tristate area | 328 (43%) | 273 (43%) | 55 (42.0%) | |
| Other | 19 (2.5%) | 15 (2.4%) | 4 (3.1%) | 0.88 |
| Laboratory values at VRE testing (median, IQR) | ||||
| Creatinine (mg/dL) | 1.1 (0.8–2.1) | 1.1 (0.7–1.1) | 1.03 (0.8–2.0) | 0.58 |
| Albumin (g/dL) | 2.8 (2.4–3.2) | 2.8 (2.4–3.2) | 2.7 (2.3–3.1) | 0.11 |
| White blood cell count (cells × 103/µL) | 10 (6.5–14) | 10 (6.5–14) | 9.6 (6.3–14) | 0.74 |
| Hematocrit (%) | 33 (32–34) | 33 (32–34) | 33 (31–34) | 0.19 |
| Platelets (× 103/µL) | 138 (135–141) | 138 (135–141) | 137 (135–141) | 0.11 |
| Surgery after VRE test | 246 (32%) | 209 (33%) | 37 (28%) | 0.27 |
| Mechanical ventilation after VRE test | 450 (59%) | 371 (59%) | 79 (60%) | 0.76 |
| Immunosuppression exposure after VRE test | 430 (57%) | 348 (55%) | 82 (63%) | 0.12 |
| Antibiotic exposure after VRE test | ||||
| Any antibiotic | 719 (95%) | 483 (77%) | 131 (100%) |
|
| Vancomycin IV | 571 (75%) | 467 (74%) | 104 (79%) | 0.21 |
| VRE-targeted therapy | 15 (2.6%) | 13 (2.7%) | 2 (1.9%) | 0.64 |
| LOS (days; median, IQR) | ||||
| Hospital LOS | 15 (8–31) | 14 (7–29) | 19 (10–44) |
|
| Intensive care unit LOS | 4 (2–8) | 4 (2–8) | 5 (3–9) |
|
| In-hospital mortality | 52 (6.8%) | 36 (5.7%) | 16 (12%) |
|
Gastrointestinal pathogen PCR panel and Clostridium difficile test outcomes in patients with and without vancomycin resistant Enterococcus colonization
| Variable | Total (n = 761) | No VRE (n = 630) | VRE (n = 131) | p value |
|---|---|---|---|---|
| GI PCR tests | 761 | 630 (82.8%) | 131 (17.2%) | |
| Positive | 126 (17%) | 114 (18.1%) | 12 (9.2%) |
|
| Tests with more than one pathogen | 34 (4.5%) | 32 (5.1%) | 2 (1.5%) | 0.07 |
| Place of test | ||||
| Emergency department | 98 (12.9%) | 81 (12.9%) | 17 (13%) | |
| Endoscopy | 7 (0.9%) | 7 (1.1%) | 0 | |
| Inpatient | 452 (60%) | 373 (59.2%) | 79 (60%) | |
| Outpatient | 204 (27%) | 169 (26.8%) | 35 (27%) | 0.69 |
| Days from VRE test to GI PCR (median, IQR) | 42 (5–463) | 37 (5–495) | 51 (6–479) | 0.25 |
| Test obtained during initial hospital stay | 369 (48%) | 312 (49.5%) | 57 (43.5%) | 0.21 |
| 716 | 586 (81.8%) | 130 (18.2%) | ||
| Positive | 81 (11%) | 61 (10.4%) | 20 (15%) | 0.11 |
| Place of test | ||||
| Inpatient | 635 (100%) | 586 (100%) | 130 (100%) | – |
| Days from VRE test to CDI testing (median, IQR) | 23 (4–370) | 18 (4–351) | 41 (5–503) | 0.13 |
| Test obtained during initial hospital stay | 439 (61%) | 364 (62%) | 75 (58%) | 0.11 |
Fig. 1Percent of total tests positive for each pathogen or class of pathogens (* = significant; CDI = Clostridium difficile infection)
Predictors of a positive gastrointestinal pathogen PCR panel or Clostridium difficile test
| Variable | GI PCR | |||
|---|---|---|---|---|
| Univariable HR | Multivariable HR | Univariable HR | Multivariable HR | |
| Sex | ||||
| Male | 0.71 (0.49–1.02) | 0.89 (0.60–1.31) | ||
| Race | ||||
| Asian | 0.99 (0.40–2.48) | 0.48 (0.12–2.00) | ||
| Black | 0.68 (0.36–1.31) | 0.66 (0.32–1.34) | ||
| White | 0.96 (0.65–1.40) | 0.87 (0.57–1.32) | ||
| Other/unknown | Reference | Reference | ||
| Ethnicity | ||||
| Hispanic | 1.23 (0.77–1.98) | 1.16 (0.84–1.60) | ||
| Non-hispanic | 0.91 (0.61–1.36) | 0.89 (0.68–1.17) | ||
| Unknown | Reference | Reference | ||
| Age group | ||||
| 18–29 | 0.54 (0.21–1.38) | 0.81 (0.34–1.95) | ||
| 30–49 | 1.17 (0.69–2.01) | 0.75 (0.39–1.44) | ||
| 50–69 | 0.99 (0.64–1.53) | 0.96 (0.61–1.50) | ||
| > 70 | Reference | Reference | ||
| Residential zip code | ||||
| New York city | 0.40 (0.15–1.12) | 1.87 (0.26–13.51) | ||
| Tristate area | 0.42 (0.15–1.16) | 1.84 (0.25–13.40) | ||
| Other | Reference | Reference | ||
| Laboratory values at VRE testing | ||||
| Creatinine (mg/dL) | 0.89 (0.79–0.99) | 0.89 (0.79–1.01) | 0.98 (0.88–1.08) | |
| Albumin (g/dL) | 1.08 (0.77–1.54) | 0.82 (0.58–1.17) | ||
| White blood cell count (cell/mcL) | 1.01 (0.99–1.04) | 1.02 (0.99–1.05) | ||
| Hematocrit (%) | 1.00 (0.97–1.03) | 0.97 (0.95–1.00) | ||
| Platelets (/mcL) | 1.04 (1.01–1.08) | 1.01 (0.97–1.05) | 1.01 (0.97–1.06) | |
| VRE colonization | 0.52 (0.28–0.96) | 0.47 (0.25–0.88) | 1.39 (0.83–2.27) | 1.32 (0.79–2.19) |
| Surgery after VRE test | 1.02 (0.70–1.49) | 0.96 (0.63–1.48) | ||
| Mechanical ventilation after VRE test | 1.18 (0.82–1.70) | 1.31 (0.88–1.95) | ||
| Immunosuppression exposure after VRE test | 1.00 (0.70–1.44) | 1.10 (0.74–1.63) | ||
| Antibiotic exposure after VRE testing | ||||
| Any antibiotic | 0.93 (0.59–1.49) | 1.20 (0.74–1.93) | ||
| VRE–targeted therapy | 0.72 (0.23–2.26) | 1.02 (0.25–4.18) | ||
| LOS | ||||
| Hospital LOS | 1.01 (1.00–1.01) | 1.00 (0.99–1.01) | ||
| ICU LOS | 1.01 (1.00–1.03) | 1.02 (1.01–1.04) | 1.02 (1.01–1.04) | |
| In-hospital mortality | 0.93 (0.41–2.13) | 1.37 (0.50–3.72) | ||
| Place of GI PCR test | ||||
| Emergency department | 0.85 (0.45–1.61) | |||
| Endoscopy | 1.56 (0.37–6.60) | |||
| Inpatient | 0.87 (0.58–1.30) | |||
| Outpatient | Reference | |||
Fig. 2Time to positive gastrointestinal pathogen PCR panel (a) or positive Clostridium difficile PCR (b) stratified by VRE colonization status
Distribution of pathogens among those patients with a positive stool PCR result
| No VRE colonization | VRE colonization | p value | |
|---|---|---|---|
| Total pathogens | 216 | 35 | |
| Bacteria | 163 (76%) | 30 (86%) | 0.20 |
| 60 (28%) | 5 (14%) | 0.10 | |
| Enteropathogenic | 38 (18%) | 3 (8.6%) | 0.18 |
| Enteroaggregative | 25 (12%) | 1 (2.9%) | 0.14 |
| Entertoxigenic | 9 (4.2%) | 0 | 0.37 |
| Shiga toxin-producing | 6 (2.8%) | 1 (2.9%) | 0.66 |
| Shigella/enteroinvasive | 8 (3.7%) | 0 | 0.38 |
| 0 | 0 | – | |
| 9 (4.2%) | 1 (2.9%) | 0.58 | |
| Salmonella | 3 (1.4%) | 2 (5.7%) | 0.14 |
| Vibrio species | 0 | 1 (2.9%) | 0.14 |
|
| 1 (0.5%) | 1 (2.9%) | 0.26 |
|
| 3 (1.4%) | 0 | 0.64 |
|
| 61 (28%) | 20 (57%) | < 0.01 |
| Parasites | 9 (4.2%) | 1 (2.9%) | 0.58 |
|
| 4 (1.9%) | 1 (2.9%) | 0.53 |
|
| 1 (0.5%) | 0 | 0.86 |
|
| 0 | 0 | – |
|
| 4 (1.9%) | 0 | 0.55 |
| Virus | 44 (20%) | 3 (8.6%) | 0.11 |
| Norovirus (genogroups GI, GII) | 30 (14%) | 2 (5.7%) | 0.27 |
| Rotavirus A | 2 (0.9%) | 1 (2.9%) | 0.36 |
| Sapovirus (serotypes I, II, IV, V) | 9 (4.2%) | 0 | 0.37 |
| Adenovirus F40/41 | 2 (0.9%) | 0 | 0.74 |
| Astrovirus | 1 (0.5%) | 0 | 0.86 |