Literature DB >> 29995832

RNA-binding proteins in bacteria.

Erik Holmqvist1, Jörg Vogel2,3.   

Abstract

RNA-binding proteins (RBPs) are central to most if not all cellular processes, dictating the fate of virtually all RNA molecules in the cell. Starting with pioneering work on ribosomal proteins, studies of bacterial RBPs have paved the way for molecular studies of RNA-protein interactions. Work over the years has identified major RBPs that act on cellular transcripts at the various stages of bacterial gene expression and that enable their integration into post-transcriptional networks that also comprise small non-coding RNAs. Bacterial RBP research has now entered a new era in which RNA sequencing-based methods permit mapping of RBP activity in a truly global manner in vivo. Moreover, the soaring interest in understudied members of host-associated microbiota and environmental communities is likely to unveil new RBPs and to greatly expand our knowledge of RNA-protein interactions in bacteria.

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Year:  2018        PMID: 29995832     DOI: 10.1038/s41579-018-0049-5

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  68 in total

1.  Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation.

Authors:  Ira Alexandra Iosub; Robert Willem van Nues; Stuart William McKellar; Karen Jule Nieken; Marta Marchioretto; Brandon Sy; Jai Justin Tree; Gabriella Viero; Sander Granneman
Journal:  Elife       Date:  2020-05-01       Impact factor: 8.140

2.  S1 Domain RNA-Binding Protein CvfD Is a New Posttranscriptional Regulator That Mediates Cold Sensitivity, Phosphate Transport, and Virulence in Streptococcus pneumoniae D39.

Authors:  Dhriti Sinha; Jiaqi J Zheng; Ho-Ching Tiffany Tsui; John D Richardson; Nicholas R De Lay; Malcolm E Winkler
Journal:  J Bacteriol       Date:  2020-08-25       Impact factor: 3.490

Review 3.  Approaches for measuring the dynamics of RNA-protein interactions.

Authors:  Donny D Licatalosi; Xuan Ye; Eckhard Jankowsky
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-08-20       Impact factor: 9.957

Review 4.  New molecular interactions broaden the functions of the RNA chaperone Hfq.

Authors:  Ricardo F Dos Santos; Cecília M Arraiano; José M Andrade
Journal:  Curr Genet       Date:  2019-05-18       Impact factor: 3.886

5.  Capture and Identification of RNA-binding Proteins by Using Click Chemistry-assisted RNA-interactome Capture (CARIC) Strategy.

Authors:  Rongbing Huang; Mengting Han; Liying Meng; Xing Chen
Journal:  J Vis Exp       Date:  2018-10-19       Impact factor: 1.355

6.  TriPepSVM: de novo prediction of RNA-binding proteins based on short amino acid motifs.

Authors:  Annkatrin Bressin; Roman Schulte-Sasse; Davide Figini; Erika C Urdaneta; Benedikt M Beckmann; Annalisa Marsico
Journal:  Nucleic Acids Res       Date:  2019-05-21       Impact factor: 16.971

7.  Structure, Assembly, and Function of Tripartite Efflux and Type 1 Secretion Systems in Gram-Negative Bacteria.

Authors:  Ilyas Alav; Jessica Kobylka; Miriam S Kuth; Klaas M Pos; Martin Picard; Jessica M A Blair; Vassiliy N Bavro
Journal:  Chem Rev       Date:  2021-04-28       Impact factor: 60.622

Review 8.  New sequencing methodologies reveal interplay between multiple RNA-binding proteins and their RNAs.

Authors:  Sahar Melamed
Journal:  Curr Genet       Date:  2020-03-19       Impact factor: 3.886

Review 9.  Prevalence of small base-pairing RNAs derived from diverse genomic loci.

Authors:  Philip P Adams; Gisela Storz
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2020-03-05       Impact factor: 4.490

10.  Widespread targeting of nascent transcripts by RsmA in Pseudomonas aeruginosa.

Authors:  Michael J Gebhardt; Tracy K Kambara; Kathryn M Ramsey; Simon L Dove
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-24       Impact factor: 11.205

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