Literature DB >> 29990124

LMap: Shape-Preserving Local Mappings for Biomedical Visualization.

Saad Nadeem, Xianfeng Gu, Arie E Kaufman.   

Abstract

Visualization of medical organs and biological structures is a challenging task because of their complex geometry and the resultant occlusions. Global spherical and planar mapping techniques simplify the complex geometry and resolve the occlusions to aid in visualization. However, while resolving the occlusions these techniques do not preserve the geometric context, making them less suitable for mission-critical biomedical visualization tasks. In this paper, we present a shape-preserving local mapping technique for resolving occlusions locally while preserving the overall geometric context. More specifically, we present a novel visualization algorithm, LMap, for conformally parameterizing and deforming a selected local region-of-interest (ROI) on an arbitrary surface. The resultant shape-preserving local mappings help to visualize complex surfaces while preserving the overall geometric context. The algorithm is based on the robust and efficient extrinsic Ricci flow technique, and uses the dynamic Ricci flow algorithm to guarantee the existence of a local map for a selected ROI on an arbitrary surface. We show the effectiveness and efficacy of our method in three challenging use cases: (1) multimodal brain visualization, (2) optimal coverage of virtual colonoscopy centerline flythrough, and (3) molecular surface visualization.

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Year:  2017        PMID: 29990124      PMCID: PMC6309451          DOI: 10.1109/TVCG.2017.2772237

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  24 in total

1.  Genus zero surface conformal mapping and its application to brain surface mapping.

Authors:  Xianfeng Gu; Yalin Wang; Tony F Chan; Paul M Thompson; Shing-Tung Yau
Journal:  IEEE Trans Med Imaging       Date:  2004-08       Impact factor: 10.048

2.  Context preserving maps of tubular structures.

Authors:  Joseph Marino; Wei Zeng; Xianfeng Gu; Arie Kaufman
Journal:  IEEE Trans Vis Comput Graph       Date:  2011-12       Impact factor: 4.579

3.  Quantitative evaluation of three cortical surface flattening methods.

Authors:  Lili Ju; Monica K Hurdal; Josh Stern; Kelly Rehm; Kirt Schaper; David Rottenberg
Journal:  Neuroimage       Date:  2005-08-19       Impact factor: 6.556

4.  Optimization of brain conformal mapping with landmarks.

Authors:  Yalin Wang; Lok Ming Lui; Tony F Chan; Paul M Thompson
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

5.  Colon flattening using heat diffusion Riemannian metric.

Authors:  Krishna Chaitanya Gurijala; Rui Shi; Wei Zeng; Xianfeng Gu; Arie Kaufman
Journal:  IEEE Trans Vis Comput Graph       Date:  2013-12       Impact factor: 4.579

6.  PREDDIMER: a web server for prediction of transmembrane helical dimers.

Authors:  Anton A Polyansky; Anton O Chugunov; Pavel E Volynsky; Nikolay A Krylov; Dmitry E Nolde; Roman G Efremov
Journal:  Bioinformatics       Date:  2013-11-07       Impact factor: 6.937

7.  Decal-Maps: Real-Time Layering of Decals on Surfaces for Multivariate Visualization.

Authors:  Allan Rocha; Usman Alim; Julio Daniel Silva; Mario Costa Sousa
Journal:  IEEE Trans Vis Comput Graph       Date:  2017-01       Impact factor: 4.579

8.  Spherical Parameterization Balancing Angle and Area Distortions.

Authors:  Saad Nadeem; Zhengyu Su; Wei Zeng; Arie Kaufman; Xianfeng Gu
Journal:  IEEE Trans Vis Comput Graph       Date:  2016-03-15       Impact factor: 4.579

9.  Visualization modes for CT colonography using cylindrical and planar map projections.

Authors:  D S Paik; C F Beaulieu; R B Jeffrey; C A Karadi; S Napel
Journal:  J Comput Assist Tomogr       Date:  2000 Mar-Apr       Impact factor: 1.826

Review 10.  The WU-Minn Human Connectome Project: an overview.

Authors:  David C Van Essen; Stephen M Smith; Deanna M Barch; Timothy E J Behrens; Essa Yacoub; Kamil Ugurbil
Journal:  Neuroimage       Date:  2013-05-16       Impact factor: 6.556

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  1 in total

1.  LDeform: Longitudinal deformation analysis for adaptive radiotherapy of lung cancer.

Authors:  Saad Nadeem; Pengpeng Zhang; Andreas Rimner; Jan-Jakob Sonke; Joseph O Deasy; Allen Tannenbaum
Journal:  Med Phys       Date:  2019-11-26       Impact factor: 4.071

  1 in total

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