Literature DB >> 29989288

Overcoming Volume Selectivity of Dipolar Recoupling in Biological Solid-State NMR Spectroscopy.

Zdeněk Tošner1,2, Riddhiman Sarkar1,3, Johanna Becker-Baldus4, Clemens Glaubitz4, Sebastian Wegner5, Frank Engelke5, Steffen J Glaser6, Bernd Reif1,3.   

Abstract

Dipolar recoupling in solid-state NMR is an essential method for establishing correlations between nuclei that are close in space. In applications on protein samples, the traditional experiments like ramped and adiabatic DCP suffer from the fact that dipolar recoupling occurs only within a limited volume of the sample. This selection is dictated by the radiofrequency (rf) field inhomogeneity profile of the excitation solenoidal coil. We employ optimal control strategies to design dipolar recoupling sequences with substantially larger responsive volume and increased sensitivity. We show that it is essential to compensate for additional temporal modulations induced by sample rotation in a spatially inhomogeneous rf field. Such modulations interfere with the pulse sequence and decrease its performance. Using large-scale optimizations we developed pulse schemes for magnetization transfer from amide nitrogen to carbonyl (NCO) as well as aliphatic carbons (NCA). Our experiments yield a signal intensity increased by a factor of 1.5 and 2.0 for NCA and NCO transfers, respectively, compared to conventional ramped DCP sequences. Consistent results were obtained using several biological samples and NMR instruments.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  dipolar recoupling; optimal control; solid-state NMR spectroscopy; structural biology; volume selection

Mesh:

Year:  2018        PMID: 29989288     DOI: 10.1002/anie.201805002

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  10 in total

1.  Hybridization of TEDOR and NCX MAS solid-state NMR experiments for simultaneous acquisition of heteronuclear correlation spectra and distance measurements.

Authors:  T Gopinath; Songlin Wang; John Lee; Hideki Aihara; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2019-02-25       Impact factor: 2.835

2.  Optimization of band-selective homonuclear dipolar recoupling in solid-state NMR by a numerical phase search.

Authors:  Zhengfeng Zhang; Hui Liu; Jing Deng; Robert Tycko; Jun Yang
Journal:  J Chem Phys       Date:  2019-04-21       Impact factor: 3.488

Review 3.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

4.  Global response of diacylglycerol kinase towards substrate binding observed by 2D and 3D MAS NMR.

Authors:  Kristin Möbius; Sina Kazemi; Peter Güntert; Andreas Jakob; Alexander Heckel; Johanna Becker-Baldus; Clemens Glaubitz
Journal:  Sci Rep       Date:  2019-03-08       Impact factor: 4.379

5.  Maximizing efficiency of dipolar recoupling in solid-state NMR using optimal control sequences.

Authors:  Zdeněk Tošner; Matthias J Brandl; Jan Blahut; Steffen J Glaser; Bernd Reif
Journal:  Sci Adv       Date:  2021-10-13       Impact factor: 14.136

6.  NMR Assignment of Methyl Groups in Immobilized Proteins Using Multiple-Bond 13C Homonuclear Transfers, Proton Detection, and Very Fast MAS.

Authors:  Piotr Paluch; Rafal Augustyniak; Mai-Liis Org; Kalju Vanatalu; Ats Kaldma; Ago Samoson; Jan Stanek
Journal:  Front Mol Biosci       Date:  2022-03-29

7.  SAA fibrils involved in AA amyloidosis are similar in bulk and by single particle reconstitution: A MAS solid-state NMR study.

Authors:  Arpita Sundaria; Falk Liberta; Dilan Savran; Riddhiman Sarkar; Natalia Rodina; Carsten Peters; Nadine Schwierz; Christian Haupt; Matthias Schmidt; Bernd Reif
Journal:  J Struct Biol X       Date:  2022-07-19

8.  Mapping the Binding Interface of PET Tracer Molecules and Alzheimer Disease Aβ Fibrils by Using MAS Solid-State NMR Spectroscopy.

Authors:  Zheng Niu; Riddhiman Sarkar; Michaela Aichler; Hans-Jürgen Wester; Behrooz Hooshyar Yousefi; Bernd Reif
Journal:  Chembiochem       Date:  2020-05-19       Impact factor: 3.164

9.  Seeded fibrils of the germline variant of human λ-III immunoglobulin light chain FOR005 have a similar core as patient fibrils with reduced stability.

Authors:  Tejaswini Pradhan; Karthikeyan Annamalai; Riddhiman Sarkar; Stefanie Huhn; Ute Hegenbart; Stefan Schönland; Marcus Fändrich; Bernd Reif
Journal:  J Biol Chem       Date:  2020-10-22       Impact factor: 5.157

10.  Backbone Torsion Angle Determination Using Proton Detected Magic-Angle Spinning Nuclear Magnetic Resonance.

Authors:  Kai Xue; Evgeny Nimerovsky; Kumar A Tekwani Movellan; Stefan Becker; Loren B Andreas
Journal:  J Phys Chem Lett       Date:  2021-12-27       Impact factor: 6.475

  10 in total

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