| Literature DB >> 29988527 |
Melisa Gualdrón-López1,2, Erika L Flannery3, Niwat Kangwanrangsan4, Vorada Chuenchob3, Dietmar Fernandez-Orth1, Joan Segui-Barber1, Felix Royo5, Juan M Falcón-Pérez5,6,7, Carmen Fernandez-Becerra1,2, Marcus V G Lacerda8,9, Stefan H I Kappe3, Jetsumon Sattabongkot10, Juan R Gonzalez1, Sebastian A Mikolajczak3, Hernando A Del Portillo1,2,11.
Abstract
Exosomes are extracellular vesicles of endocytic origin containing molecular signatures implying the cell of origin; thus, they offer a unique opportunity to discover biomarkers of disease. Plasmodium vivax, responsible for more than half of all malaria cases outside Africa, is a major obstacle in the goal of malaria elimination due to the presence of dormant liver stages (hypnozoites), which after the initial infection may reactivate to cause disease. Hypnozoite infection is asymptomatic and there are currently no diagnostic tools to detect their presence. The human liver-chimeric (FRG huHep) mouse is a robust P. vivax infection model for exo-erythrocytic development of liver stages, including hypnozoites. We studied the proteome of plasma-derived exosomes isolated from P. vivax infected FRG huHep mice with the objective of identifying liver-stage expressed parasite proteins indicative of infection. Proteomic analysis of these exosomes showed the presence of 290 and 234 proteins from mouse and human origin, respectively, including canonical exosomal markers. Human proteins include proteins previously detected in liver-derived exosomes, highlighting the potential of this chimeric mouse model to study plasma exosomes derived unequivocally from human hepatocytes. Noticeably, we identified 17 parasite proteins including enzymes, surface proteins, components of the endocytic pathway and translation machinery, as well as uncharacterized proteins. Western blot analysis validated the presence of human arginase-I and an uncharacterized P. vivax protein in plasma-derived exosomes. This study represents a proof-of-principle that plasma-derived exosomes from P. vivax infected FRG-huHep mice contain human hepatocyte and P. vivax proteins with the potential to unveil biological features of liver infection and identify biomarkers of hypnozoite infection.Entities:
Keywords: Plasmodium vivax; biomarker; exosome; humanized mice; hypnozoite; proteomics
Year: 2018 PMID: 29988527 PMCID: PMC6026661 DOI: 10.3389/fmicb.2018.01271
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Figure 1Exosomes purification and characterization. (A) SEC fractions of plasma-derived exosomes from P. vivax infected FRG huHep mice from EI1 and EI2 were analyzed in a flow cytometry bead-based assay for the presence of exosomal marker CD5L. Mean fluorescence intensity (MFI) of anti-CD5L and control antibodies (rabbit-isotype) as well as protein concentration was assayed for each fraction and a representative analysis for a single sample is shown. (B) NTA profile (size [nm] vs. concentration [particles/ml]) of the fraction with the highest CD5L MFI (F8) shows enrichment in nanoparticles around 120 nm. (C) Cryo-EM of F8 confirms the presence of abundant, round nanovesicles measuring 100–150 nm. SEC fraction 12 (F12) identified aggregates and nanovesicles of diverse sizes.
Figure 2Exosome-enriched fractions (ExEFs) are depleted of contaminating plasma proteins. The log fold-change (FC) in abundance of human proteins detected by LC-MS/MS in the ExEFs and MvEFs of P. vivax infected FRG huHep mice from EI1 were compared. The horizontal line represents p = 0.01 and vertical lines correspond to a 3-log fold increase or decrease in abundance. Green points represent p > 0.01 & FC between [−3,3], blue points represent p < 0.01 and red points represent p > 0.01 & FC >3 or FC < −3. Proteins with p < 0.01 and FC>3 or FC < -3 are labeled. Supporting data are shown in Data Sheet S3.
Figure 3Human Proteome of FRG huHep plasma-derived exosomes. (A) Global analysis of all human proteins identified in EI1 and EI2 shows that of the 234 human proteins identified in the ExEFs from uninfected and P. vivax infected FRG huHep mice, 224 are reported in Vesiclepedia, a Web-Based repository of extracellular vesicle cargo proteins. (B) Subcellular localization distribution of 234 human proteins groups identified in plasma derived-exosomes from uninfected and P. vivax infected mice. Subcellular compartment was assigned based on GO terms in the UniProt database. (C) Functional enrichment analysis of the top ten more significant Gene ontology (GO) terms of human proteins group enriched in exosomes derived from plasma of uninfected and P. vivax infected FRG huHep mice (P-value 0.001). Bar plot shows biological process, cellular component, and molecular function GO categories.
Figure 4Comparison of human liver proteins from P. vivax infected FRG KO huHep mice with plasma proteins from patients in natural infections. (A) Dendogram depicting the results of a statistical comparison (supervised and lineal methods) between the human proteins identified by LC-MS/MS-based proteomics in enriched exosomes derived from plasma of P. vivax infected and uninfected FRG huHep mice from EI1. IM-1 to IM-6 (Infected mice), CM-1 to CM-4 (uninfected mice). Supporting data are shown in Data Sheet 3. (B) Twenty-three human proteins found to be significantly over-represented in infected FRG KO huHep mice (P-value < 0.05, FDR adjusted) were compared with the proteome of total plasma proteins from P. vivax patients (Ray et al., 2016). Nineteen proteins (in bold) were detected in both datasets.
P. vivax proteins identified in plasma-derived exosomes from FRG huHep infected mice.
| ATP-dependent DNA helicase Q1, putative | PVX_099345 | EI1 | |||||
| Methyltransferase, putative | PVX_000890 | EI1 | |||||
| Mitochondrial carrier protein, putative | PVX_115395 | EI1 | |||||
| Hypothetical protein, conserved | PVX_090185 | EI1 | |||||
| Merozoite surface protein 3 (MSP3.1) | PVX_097670 | EI1 | |||||
| Heat shock protein 70, putative | PVX_099315 | EI2 | |||||
| Hypothetical protein, conserved | PVX_110940 | EI2 | |||||
| Histone H2A, putative | PVX_095190 | EI2 | |||||
| Potassium channel, putative | PVX_123990 | EI2 | |||||
| Diacylglycerol kinase, putative | PVX_116900 | EI2 | |||||
| Hypothetical protein, conserved | PVX_115100 | EI2 | |||||
| Clathrin coat assembly protein AP50, putative | PVX_118455 | EI2 | |||||
| Hypothetical protein, conserved | PVX_119280 | EI2 | |||||
| Carbamoyl phosphate synthetase, putative | PVX_122240 | EI2 | |||||
| Oocyst capsule protein, putative | PVX_095215 | EI2 | |||||
| Hypothetical protein, conserved | PVX_080600 | EI2 | |||||
| 50S ribosomal protein L24, putative | PVX_123825 | EI2 | |||||
17 P. vivax proteins were identified in the exosome-enriched SEC fractions (ExEF) of infected FRG huHep mice. Proteins identified in the samples from experimental infection 1 and 2 are depicted. Gray boxes indicate protein presence.
Proteins also identified in the microvesicle-enriched SEC fractions (MvEF—Table .
Plasmodium vivax proteins identified in the microvesicles-enriched SEC fractions (MvEF) of plasma-derived exosomes from FRG huHep infected mice.
| Variable surface protein Vir12, putative | PVX_106220 | EI1 | |||||
| Hypothetical protein | PVX_111420 | EI1 | |||||
| Hypothetical protein, conserved | PVX_089245 | EI1 | |||||
| Reticulocyte binding protein 1b | PVX_098582 | EI1 | |||||
| Hypothetical protein, conserved | PVX_087720 | EI1/EI2 | |||||
| Hypothetical protein, conserved | PVX_092720 | EI1/EI2 | |||||
| THO complex subunit 2, putative | PVX_101385 | EI1 | |||||
| Hypothetical protein, conserved | PVX_090990 | EI1/EI2 | |||||
| Hypothetical protein, conserved | PVX_082938 | EI1 | |||||
| Hypothetical protein, conserved | PVX_124005 | EI2 | |||||
| ATP-dependent acyl-CoA synthetase, putative | PVX_002785 | EI2 | |||||
| M18 aspartyl aminopeptidase, putative | PVX_087090 | EI2 | |||||
| Merozoite surface protein 3 (MSP3.5) | PVX_097690 | EI2 | |||||
| PIR protein_unspecified product | PVX_241290 | EI2 | |||||
| 26S proteasome regulatory subunit p55, putative | PVX_001760 | EI2 | |||||
| Hypothetical protein, conserved | PVX_095185 | EI2 | |||||
| Hypothetical protein, conserved | PVX_117060 | EI2 | |||||
| Merozoite surface protein 3 (MSP3.10) | PVX_097720 | EI2 | |||||
| PIR protein_variable surface protein Vir9-related | PVX_096935 | EI2 | |||||
| PIR protein_ VIR protein | PVX_101503 | EI2 | |||||
20 P. vivax proteins were identified in the MvEFs of infected FRG huHep mice. Proteins identified in the samples from experimental infection 1 and 2 are depicted. Gray boxes indicate protein presence at the indicated days post infection. Of note, high quality spectrum of individual peptides were manually inspected. Extended mass spectrometry data is found in the Data Sheet .
Figure 5Validation of arginase I as an exosomal-associated protein. (A) Commercial anti-arginase I antibodies were used to analyze the presence of arginase I in SEC fraction 11 from P. vivax infected at 8 and 16 dpi (EI1: D86 and EI2: D162) and uninfected (NI) FRG huHep mice. These samples correspond to mice where arginase I was identified by LC-MS/MS. An equal volume of each fraction was loaded on the gel. Ten micro grams of liver extract from mouse and human were used as positive controls. (B) Western blot analysis of ExEFs purified from P. vivax infected FRG huHep mice from EI2 on days 8, 10, 16, and 21 post-infection. An equal volume of CD5L-highest fraction was loaded on the gel. (C) Flow cytometry bead-based assay showing arginase I detection in exosomal fractions isolated from plasma of a P. vivax patient. This sample correspond to an unidentified stored plasma of the biobank from the FMT-HVD. Mean fluorescence intensity (MFI) of anti-arginase and control antibodies (rabbit-isotype) was assayed for each fraction. CD5L was used as plasma exosomal marker.
Figure 6Validation of PVX110940 in plasma-derived exosomes from P. vivax infected FRG huHep mice. (A) Schematic representation of full-length PVX110940 protein and a recombinant GST-fusion truncated (GST-PVX110940-Tr) version containing a predicted B-cell antigenic region of 156 amino acids. Red square represents a predicted N-terminal signal peptide. (B) GST-PV110940-Tr was produced from two E. coli clones (C11 and C25) in a wheat germ cell-free system and affinity-purified products resolved on SDS-PAGE. Western blot analysis using monoclonal anti-GST antibodies. (C) Recombinant GST-PVX110940-Tr was used to immunize mice and produce polyclonal antibodies. Western blot analysis shows recognition of GST-PVX110940-Tr purified recombinant protein and purified GST. (D) Flow cytometry bead-based assay showing PVX110940 detection in ExEF from plasma of P. vivax infected FRG huHep mice from EI1 and EI2. Beads were incubated with the highest-CD5L SEC fraction of each sample and used for detection of PVX110940 using the polyclonal antibodies raised in mice. Mean fluorescence intensity (MFI) of PVX110940 and controls was assayed. Specificity controls were as follows: C1: Highest-CD5L SEC fraction of each sample incubated with Alexa-488 mouse secondary antibody. C2: Pool of CD5L highest fraction of all samples incubated with isotype rabbit antibody and Alexa-488 mouse secondary antibody. Stars indicate the samples were positive detection was observed over the background signal observed in uninfected mice (Dashed line). (E) Western blot analysis of PVX-110940- in isolated exosomes (CD5L-highest SEC fraction) derived from plasma of P. vivax infected FRG huHep mice from EI1 and EI2. Hundred micro liters of CD5L-highest fraction were blotted. Membranes were incubated with 1/50 of polyclonal anti-PVX110940 antibody. *Samples where a positive signal at the expected molecular size (84 kDa) is observed.