| Literature DB >> 29988406 |
Tanja K Halczok1,2, Stefan D Brändel2,3, Victoria Flores2,4, Sébastien J Puechmaille1, Marco Tschapka2,3, Rachel A Page2, Gerald Kerth1.
Abstract
Gene flow, maintained through natal dispersal and subsequent mating events, is one of the most important processes in both ecology and population genetics. Among mammalian populations, gene flow is strongly affected by a variety of factors, including the species' ability to disperse, and the composition of the environment which can limit dispersal. Information on dispersal patterns is thus crucial both for conservation management and for understanding the social system of a species. We used 16 polymorphic nuclear microsatellite loci in addition to mitochondrial DNA sequences (1.61 kbp) to analyse the population structure and the sex-specific pattern of natal dispersal in the frog-eating fringe-lipped bat, Trachops cirrhosus, in Central Panama. Our study revealed that-unlike most of the few other investigated Neotropical bats-gene flow in this species is mostly male-mediated. Nevertheless, distinct genetic clusters occur in both sexes. In particular, the presence of genetic differentiation in the dataset only consisting of the dispersing sex (males) indicates that gene flow is impeded within our study area. Our data are in line with the Panama Canal in connection with the widening of the Río Chagres during the canal construction acting as a recent barrier to gene flow. The sensitivity of T. cirrhosus to human-induced habitat modifications is further indicated by an extremely low capture success in highly fragmented areas. Taken together, our genetic and capture data provide evidence for this species to be classified as less mobile and thus vulnerable to habitat change, information that is important for conservation management.Entities:
Keywords: Neotropics; Trachops cirrhosus; gene flow; population genetics; sex‐biased dispersal
Year: 2018 PMID: 29988406 PMCID: PMC6024115 DOI: 10.1002/ece3.4161
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Figure 1The study area and sampling sites of Trachops cirrhosus in Central Panama. The filled triangular markings represent the different sampling sites Barro Colorado Island (BCI); Peña Blanca (PB), Bohio (BO), Gigante (GI), Culebra Cut (CUL), and Gamboa (GA). As GA and CUL both consist of various netting sites, those are indicated by open circles for GA and open triangles for CUL. The stars represent all islands were sampling efforts were undertaken (I) and the diamonds represent those netting sites summarized as A. The gray line roughly represents the former route of Río Chagres before the construction of the Panama Canal (Shepherd, 1911)
Characterization of the newly developed microsatellite loci for Trachops cirrhosus
| Locus | Repeat motif | Size range (bp) | Multiplex; Label | GenBank accession no. | Primer sequences (5′–3′) |
|---|---|---|---|---|---|
|
| (GT)21 | 173–227 | 1; FAM |
| F: AAACTTGTTACAGGCTCC |
| R: CTTAATTAAACGTGACCC | |||||
|
| (TTC)19 | 304–396 | 1; FAM |
| F: AAGAGTAGAGAAATGGTGC |
| R: CTCTTTAGAATCAATCAGC | |||||
|
| (GATG)10 | 471–578 | 1; NED |
| F: ATAGTTTAAGCTCACCTCC |
| R: ATGAGAATATCTCTGGGG | |||||
|
| (GT)16 | 82–114 | 1; NED |
| F: GTGATCATCATATAATACGG |
| R: TTAGTTCCTTTATGCTACC | |||||
|
| (CT)10 | 263–328 | 2; VIC |
| F: AGATTCAGACACCTACCC |
| R: TCTGTACTCTTGAGCAGC | |||||
|
| (GT)15 | 222–264 | 1; NED |
| F: CATCATTTCTTCTGAACG |
| R: TAAACACATTCGCATACC | |||||
|
| (TTCC)13 | 315–378 | 2; FAM |
| F: GCTGTAGTGTAGATTGTCC |
| R: AAAGAAACACTATGAGCC | |||||
|
| (TG)10 | 460–521 | 2; NED |
| F: ATTCTCAACACATCATATCC |
| R: ACATAGACAGTGCTCAGC | |||||
|
| (ATC)11 | 168–218 | 2; NED |
| F: ACAAACTCTTCTAATTGTGG |
| R: ATGAACCTTTATTGACTACC | |||||
|
| (CAA)9 | 369–406 | 2; PET |
| F: ACAGCCTAACTATCTCTCC |
| R: TTTTGAGAATAGAGGTCG | |||||
|
| (ATGG)11 | 90–140 | 2; PET |
| F: GACTCTGAGATCCCATGCTTGA |
| R: ACCTTTTCCTTCACCTTCCCTC | |||||
|
| (GAAG)17 | 277–349 | 1; VIC |
| F: TTCTAAGTCCTCTAGCTACC |
| R: AGGTAGCCAATGACTACC | |||||
|
| (AATG)8 | 71–127 | 2; VIC |
| F: TGATGTTTACTTCAGCCTGGC |
| R: CCTCTGGAAGCCTTTGTTCG | |||||
|
| (ATTT)10 | 263–324 | 2; NED |
| F: GAATGAACACTGTCTCAGG |
| R: ACTTGGACTAAAAGAGGC | |||||
|
| (CCTC)15 | 335–394 | 2; VIC |
| F: TCCAACTGACTGATAACC |
| R: ACCATAAGTTTAGTCCAGG | |||||
|
| (AAAC)8 | 473–556 | 1; PET |
| F: ATACTGGCTATGTCATTACC |
| R: CACTGTTCTTCTGTAACAGG |
The following abbreviations are used: the observed fragment length range (Size range), in base pair (bp), the multiplex in which each marker was included (Multiplex) and which fluorescent label was used (Label) and both primer sequences (F, forward; R, reverse). All sequences have been deposited in the GenBank under the accession numbers provided.
Number of samples used for structure for dataF+JUV (females + all juveniles irrespective of their sex) and dataM (only adult males) after the removal of close relatives
| Sampling site | dataF+JUV | dataM |
|---|---|---|
| Barro Colorado Island (BCI) | 12 | 23 |
| Bohio (BO) | 5 | 5 |
| Gamboa (GA) | 83 | 97 |
| Gigante (GI) | 6 | — |
| Culebra Cut (CUL) | 15 | 17 |
Subsampling was carried out by randomly choosing 30 different individuals from this site and analysing 10 subsampled datasets.
Results of the one‐sided sex‐biased dispersal test conducted in fstat assuming female philopatry
|
| vAlC | mAlC |
|
|
| |
|---|---|---|---|---|---|---|
| Test for sex‐biased dispersal | ||||||
| Adult females | 106 | 11.8055 | 0.9386 | 0.6050 | 0.0558 | 0.0358 |
| Adult males | 196 | 46.2739 | −0.5076 | 0.6280 | 0.0884 | 0.0201 |
| | .0259 | .0062 | .0030 | .0418 | .0099 | |
| Additional test (males of different age groups) | ||||||
| Juvenile males | 60 | 14.7684 | 0.9815 | 0.6118 | 0.0761 | 0.0620 |
| Adult males | 196 | 44.2519 | −0.3005 | 0.6280 | 0.0884 | 0.0201 |
| | .3748 | .0538 | .0442 | .1887 | .0038 | |
Calculated values for variance in assignment (vAIC), mean source‐population‐assignment (mAIC), within‐group diversity (H S), the inbreeding coefficient of an individual relative to the group (F IS) and diversity measures among groups (F ST) are listed together with their appertaining p‐values.
Significant p‐values at the .05 nominal level.
Figure 2Average kinship coefficients, F , between pairs of individuals plotted against geographical distance for dataF (adult females) displayed in black and dataM (adult males) displayed in gray. The dashed lines represent 95% confidence intervals for F under the null hypothesis that genotypes are randomly distributed
Figure 3Bar plot graph of estimated membership coefficient of Trachops cirrhosus from Bayesian analysis generated using structure and the locprior option for (a) dataF+JUV (females + all juveniles irrespective of their sex; K = 3) and (b) dataM (only adult males; K = 2). BCI, Barro Colorado Island; BO, Bohio; GA, Gamboa; GI, Gigante; CUL, Culebra Cut. Additionally, the maps display an overview of the netting sites and the cluster assignment of the sampled individuals. Sizes in the map are proportional to sample size
Figure 4Posterior phylogenetic tree and median‐joining haplotype network for Trachops cirrhosus based on 733 bp of mtDNA (cytb). Sampling sites (CUL, Culebra Cut; GA, Gamboa; GI, Gigante; BCI, Barro Colorado Island; BO, Bohio; PB, Peña Blanca) and haplotype frequency scale are shown in the inset. All mtDNA sequences (n = 53) were used in this Median‐joining network. Branch lengths are not proportional to base‐pair changes (all changes are 1 base pair unless otherwise indicated). Additionally, the map displays an overview of the netting sites and the haplotypes found. Sizes in the map are proportional to sample size