Literature DB >> 29988096

Genome-wide C-SWAT library for high-throughput yeast genome tagging.

Matthias Meurer1, Yuanqiang Duan1, Ehud Sass2, Ilia Kats1, Konrad Herbst1, Benjamin C Buchmuller1, Verena Dederer1, Florian Huber1,3, Daniel Kirrmaier4, Martin Štefl1,5, Koen Van Laer6, Tobias P Dick6, Marius K Lemberg1, Anton Khmelinskii7,8, Emmanuel D Levy9, Michael Knop10,11.   

Abstract

Here we describe a C-SWAT library for high-throughput tagging of Saccharomyces cerevisiae open reading frames (ORFs). In 5,661 strains, we inserted an acceptor module after each ORF that can be efficiently replaced with tags or regulatory elements. We validated the library with targeted sequencing and tagged the proteome with bright fluorescent proteins to quantify the effect of heterologous transcription terminators on protein expression and to localize previously undetected proteins.

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Year:  2018        PMID: 29988096     DOI: 10.1038/s41592-018-0045-8

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  21 in total

Review 1.  Spatial proteomics: a powerful discovery tool for cell biology.

Authors:  Emma Lundberg; Georg H H Borner
Journal:  Nat Rev Mol Cell Biol       Date:  2019-05       Impact factor: 94.444

2.  iSeq 2.0: A Modular and Interchangeable Toolkit for Interaction Screening in Yeast.

Authors:  Xianan Liu; Zhimin Liu; Adam K Dziulko; Fangfei Li; Darach Miller; Robert D Morabito; Danielle Francois; Sasha F Levy
Journal:  Cell Syst       Date:  2019-04-03       Impact factor: 10.304

3.  High-Throughput Analysis of Protein Turnover with Tandem Fluorescent Protein Timers.

Authors:  Jia Jun Fung; Karla Blöcher-Juárez; Anton Khmelinskii
Journal:  Methods Mol Biol       Date:  2022

4.  Systematic High-Content Screening of Fluorescently Tagged Yeast Double Mutant Strains.

Authors:  Harsha Garadi Suresh; Mojca Mattiazzi Usaj
Journal:  Methods Mol Biol       Date:  2021

5.  Evolution of transcription factor binding through sequence variations and turnover of binding sites.

Authors:  Gat Krieger; Offir Lupo; Patricia Wittkopp; Naama Barkai
Journal:  Genome Res       Date:  2022-05-26       Impact factor: 9.438

6.  The Saccharomyces cerevisiae Ncw2 protein works on the chitin/β-glucan organisation of the cell wall.

Authors:  Maise Gomes Queiroz; Carolina Elsztein; Sabine Strahl; Marcos Antonio de Morais Junior
Journal:  Antonie Van Leeuwenhoek       Date:  2021-05-04       Impact factor: 2.271

7.  Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase.

Authors:  Ka-Yiu Edwin Kong; Bernd Fischer; Matthias Meurer; Ilia Kats; Zhaoyan Li; Frank Rühle; Joseph D Barry; Daniel Kirrmaier; Veronika Chevyreva; Bryan-Joseph San Luis; Michael Costanzo; Wolfgang Huber; Brenda J Andrews; Charles Boone; Michael Knop; Anton Khmelinskii
Journal:  Mol Cell       Date:  2021-05-10       Impact factor: 17.970

8.  Proteome plasticity in response to persistent environmental change.

Authors:  Matthew Domnauer; Fan Zheng; Liying Li; Yanxiao Zhang; Catherine E Chang; Jay R Unruh; Juliana Conkright-Fincham; Scott McCroskey; Laurence Florens; Ying Zhang; Christopher Seidel; Benjamin Fong; Birgit Schilling; Rishi Sharma; Arvind Ramanathan; Kausik Si; Chuankai Zhou
Journal:  Mol Cell       Date:  2021-07-21       Impact factor: 19.328

9.  Monitoring Protein Dynamics in Protein O-Mannosyltransferase Mutants In Vivo by Tandem Fluorescent Protein Timers.

Authors:  Joan Castells-Ballester; Ewa Zatorska; Matthias Meurer; Patrick Neubert; Anke Metschies; Michael Knop; Sabine Strahl
Journal:  Molecules       Date:  2018-10-12       Impact factor: 4.411

10.  YeastRGB: comparing the abundance and localization of yeast proteins across cells and libraries.

Authors:  Benjamin Dubreuil; Ehud Sass; Yotam Nadav; Meta Heidenreich; Joseph M Georgeson; Uri Weill; Yuanqiang Duan; Matthias Meurer; Maya Schuldiner; Michael Knop; Emmanuel D Levy
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

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