Literature DB >> 29979928

Network Analysis: A Systems Framework to Address Grand Challenges in Plant Pathology.

K A Garrett1,2,3, R I Alcalá-Briseño1,2,3, K F Andersen1,2,3, C E Buddenhagen1,2,3,4, R A Choudhury1,2,3, J C Fulton1,2,3, J F Hernandez Nopsa1,2,3,5, R Poudel1,2,3, Y Xing1,2,3.   

Abstract

Plant pathology must address a number of challenges, most of which are characterized by complexity. Network analysis offers useful tools for addressing complex systems and an opportunity for synthesis within plant pathology and between it and relevant disciplines such as in the social sciences. We discuss applications of network analysis, which ultimately may be integrated together into more synthetic analyses of how to optimize plant disease management systems. The analysis of microbiome networks and tripartite phytobiome networks of host-vector-pathogen interactions offers promise for identifying biocontrol strategies and anticipating disease emergence. Linking epidemic network analysis with social network analysis will support strategies for sustainable agricultural development and for scaling up solutions for disease management. Statistical tools for evaluating networks, such as Bayesian network analysis and exponential random graph models, have been underused in plant pathology and are promising for informing strategies. We conclude with research priorities for network analysis applications in plant pathology.

Keywords:  agricultural development; complexity; epidemiology; microbiomes; networks; seed systems

Mesh:

Year:  2018        PMID: 29979928     DOI: 10.1146/annurev-phyto-080516-035326

Source DB:  PubMed          Journal:  Annu Rev Phytopathol        ISSN: 0066-4286            Impact factor:   13.078


  10 in total

1.  Rootstocks Shape the Rhizobiome: Rhizosphere and Endosphere Bacterial Communities in the Grafted Tomato System.

Authors:  Ravin Poudel; Ari Jumpponen; Megan M Kennelly; Cary L Rivard; Lorena Gomez-Montano; Karen A Garrett
Journal:  Appl Environ Microbiol       Date:  2019-01-09       Impact factor: 4.792

2.  Identifying Associations in Minimum Inhibitory Concentration Values of Escherichia coli Samples Obtained From Weaned Dairy Heifers in California Using Bayesian Network Analysis.

Authors:  Brittany L Morgan; Sarah Depenbrock; Beatriz Martínez-López
Journal:  Front Vet Sci       Date:  2022-04-27

Review 3.  One model to rule them all? Modelling approaches across OneHealth for human, animal and plant epidemics.

Authors:  Adam Kleczkowski; Andy Hoyle; Paul McMenemy
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-06-24       Impact factor: 6.237

4.  Network Analysis of the Papaya Orchard Virome from Two Agroecological Regions of Chiapas, Mexico.

Authors:  Ricardo I Alcalá-Briseño; Kena Casarrubias-Castillo; Diana López-Ley; Karen A Garrett; Laura Silva-Rosales
Journal:  mSystems       Date:  2020-01-14       Impact factor: 6.496

5.  "Breaking through the 40% adoption ceiling: Mind the seed system gaps." A perspective on seed systems research for development in One CGIAR.

Authors:  Margaret A McEwan; Conny Jm Almekinders; Jorge Jl Andrade-Piedra; Erik Delaquis; Karen A Garrett; Lava Kumar; Sarah Mayanja; Bonaventure A Omondi; Srinivasulu Rajendran; Graham Thiele
Journal:  Outlook Agric       Date:  2021-01-28       Impact factor: 1.877

6.  Modeling Epidemics in Seed Systems and Landscapes To Guide Management Strategies: The Case of Sweet Potato in Northern Uganda.

Authors:  K F Andersen; C E Buddenhagen; P Rachkara; R Gibson; S Kalule; D Phillips; K A Garrett
Journal:  Phytopathology       Date:  2019-08-13       Impact factor: 4.025

7.  Whole genome sequences reveal the Xanthomonas perforans population is shaped by the tomato production system.

Authors:  Jeannie M Klein-Gordon; Sujan Timilsina; Yanru Xing; Peter Abrahamian; Karen A Garrett; Jeffrey B Jones; Gary E Vallad; Erica M Goss
Journal:  ISME J       Date:  2021-09-06       Impact factor: 10.302

Review 8.  Ecological Dynamics and Microbial Treatments against Oomycete Plant Pathogens.

Authors:  Karen E Sullam; Tomke Musa
Journal:  Plants (Basel)       Date:  2021-12-08

9.  The phytosanitary risks posed by seeds for sowing trade networks.

Authors:  Christopher E Buddenhagen; Jesse M Rubenstein; John G Hampton; M Philip Rolston
Journal:  PLoS One       Date:  2021-11-30       Impact factor: 3.240

Review 10.  Global Advances in Tomato Virome Research: Current Status and the Impact of High-Throughput Sequencing.

Authors:  Mark Paul Selda Rivarez; Ana Vučurović; Nataša Mehle; Maja Ravnikar; Denis Kutnjak
Journal:  Front Microbiol       Date:  2021-05-21       Impact factor: 5.640

  10 in total

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