Literature DB >> 29979082

Nested Transition Path Sampling.

Peter G Bolhuis1, Gábor Csányi2.   

Abstract

We introduce a novel transition path (TPS) sampling scheme employing nested sampling. Analogous to how nested sampling explores the entire configurational phase space for atomistic systems, nested TPS samples the entire available trajectory space in one simulation. Thermodynamic and path observables can be constructed a posteriori for all temperatures simultaneously. We exploit this to compute the rate of rare processes at arbitrarily low temperature through the coupling to easily accessible rates at high temperature. We illustrate the method on several model systems.

Year:  2018        PMID: 29979082     DOI: 10.1103/PhysRevLett.120.250601

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  2 in total

1.  A method of incorporating rate constants as kinetic constraints in molecular dynamics simulations.

Authors:  Z Faidon Brotzakis; Michele Vendruscolo; Peter G Bolhuis
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

2.  Mean Shift Cluster Recognition Method Implementation in the Nested Sampling Algorithm.

Authors:  Martino Trassinelli; Pierre Ciccodicola
Journal:  Entropy (Basel)       Date:  2020-02-06       Impact factor: 2.524

  2 in total

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