Literature DB >> 29978758

Quantifying performance of a diagnostic test as the expected information for discrimination: Relation to the C-statistic.

Paul McKeigue1.   

Abstract

Although the C-statistic is widely used for evaluating the performance of diagnostic tests, its limitations for evaluating the predictive performance of biomarker panels have been widely discussed. The increment in C obtained by adding a new biomarker to a predictive model has no direct interpretation, and the relevance of the C-statistic to risk stratification is not obvious. This paper proposes that the C-statistic should be replaced by the expected information for discriminating between cases and non-cases (expected weight of evidence, denoted as Λ), and that the strength of evidence favouring one model over another should be evaluated by cross-validation as the difference in test log-likelihoods. Contributions of independent variables to predictive performance are additive on the scale of Λ. Where the effective number of independent predictors is large, the value of Λ is sufficient to characterize fully how the predictor will stratify risk in a population with given prior probability of disease, and the C-statistic can be interpreted as a mapping of Λ to the interval from 0.5 to 1. Even where this asymptotic relationship does not hold, there is a one-to-one mapping between the distributions in cases and non-cases of the weight of evidence favouring case over non-case status, and the quantiles of these distributions can be used to calculate how the predictor will stratify risk. This proposed approach to reporting predictive performance is demonstrated by analysis of a dataset on the contribution of microbiome profile to diagnosis of colorectal cancer.

Entities:  

Keywords:  -statistic; Bayesian; Diagnostic test; Kullback-Leibler divergence; biomarkers; cross-validation; precision medicine; relative entropy; risk stratification; weight of evidence

Year:  2018        PMID: 29978758     DOI: 10.1177/0962280218776989

Source DB:  PubMed          Journal:  Stat Methods Med Res        ISSN: 0962-2802            Impact factor:   3.021


  7 in total

1.  Biomarker panels associated with progression of renal disease in type 1 diabetes.

Authors:  Marco Colombo; Erkka Valo; Stuart J McGurnaghan; Niina Sandholm; Luke A K Blackbourn; R Neil Dalton; David Dunger; Per-Henrik Groop; Paul M McKeigue; Carol Forsblom; Helen M Colhoun
Journal:  Diabetologia       Date:  2019-06-20       Impact factor: 10.122

2.  Comparison of serum and urinary biomarker panels with albumin/creatinine ratio in the prediction of renal function decline in type 1 diabetes.

Authors:  Marco Colombo; Stuart J McGurnaghan; Luke A K Blackbourn; R Neil Dalton; David Dunger; Samira Bell; John R Petrie; Fiona Green; Sandra MacRury; John A McKnight; John Chalmers; Andrew Collier; Paul M McKeigue; Helen M Colhoun
Journal:  Diabetologia       Date:  2020-01-08       Impact factor: 10.122

3.  On the Binormal Predictive Receiver Operating Characteristic Curve for the Joint Assessment of Positive and Negative Predictive Values.

Authors:  Gareth Hughes
Journal:  Entropy (Basel)       Date:  2020-05-26       Impact factor: 2.524

4.  Risks of and risk factors for COVID-19 disease in people with diabetes: a cohort study of the total population of Scotland.

Authors:  Stuart J McGurnaghan; Amanda Weir; Jen Bishop; Sharon Kennedy; Luke A K Blackbourn; David A McAllister; Sharon Hutchinson; Thomas M Caparrotta; Joseph Mellor; Anita Jeyam; Joseph E O'Reilly; Sarah H Wild; Sara Hatam; Andreas Höhn; Marco Colombo; Chris Robertson; Nazir Lone; Janet Murray; Elaine Butterly; John Petrie; Brian Kennon; Rory McCrimmon; Robert Lindsay; Ewan Pearson; Naveed Sattar; John McKnight; Sam Philip; Andrew Collier; Jim McMenamin; Alison Smith-Palmer; David Goldberg; Paul M McKeigue; Helen M Colhoun
Journal:  Lancet Diabetes Endocrinol       Date:  2020-12-23       Impact factor: 32.069

5.  A polygenic risk score for nasopharyngeal carcinoma shows potential for risk stratification and personalized screening.

Authors:  Yong-Qiao He; Tong-Min Wang; Mingfang Ji; Zhi-Ming Mai; Minzhong Tang; Ruozheng Wang; Yifeng Zhou; Yuming Zheng; Ruowen Xiao; Dawei Yang; Ziyi Wu; Changmi Deng; Jiangbo Zhang; Wenqiong Xue; Siqi Dong; Jiyun Zhan; Yonglin Cai; Fugui Li; Biaohua Wu; Ying Liao; Ting Zhou; Meiqi Zheng; Yijing Jia; Danhua Li; Lianjing Cao; Leilei Yuan; Wenli Zhang; Luting Luo; Xiating Tong; Yanxia Wu; Xizhao Li; Peifen Zhang; Xiaohui Zheng; Shaodan Zhang; Yezhu Hu; Weiling Qin; Bisen Deng; Xuejun Liang; Peiwen Fan; Yaning Feng; Jia Song; Shang-Hang Xie; Ellen T Chang; Zhe Zhang; Guangwu Huang; Miao Xu; Lin Feng; Guangfu Jin; Jinxin Bei; Sumei Cao; Qing Liu; Zisis Kozlakidis; Haiqiang Mai; Ying Sun; Jun Ma; Zhibin Hu; Jianjun Liu; Maria Li Lung; Hans-Olov Adami; Hongbing Shen; Weimin Ye; Tai-Hing Lam; Yi-Xin Zeng; Wei-Hua Jia
Journal:  Nat Commun       Date:  2022-04-12       Impact factor: 17.694

6.  Rapid Epidemiological Analysis of Comorbidities and Treatments as risk factors for COVID-19 in Scotland (REACT-SCOT): A population-based case-control study.

Authors:  Paul M McKeigue; Amanda Weir; Jen Bishop; Stuart J McGurnaghan; Sharon Kennedy; David McAllister; Chris Robertson; Rachael Wood; Nazir Lone; Janet Murray; Thomas M Caparrotta; Alison Smith-Palmer; David Goldberg; Jim McMenamin; Colin Ramsay; Sharon Hutchinson; Helen M Colhoun
Journal:  PLoS Med       Date:  2020-10-20       Impact factor: 11.069

7.  Development and validation of a cardiovascular risk prediction model in type 1 diabetes.

Authors:  Stuart J McGurnaghan; Paul M McKeigue; Stephanie H Read; Stefan Franzen; Ann-Marie Svensson; Marco Colombo; Shona Livingstone; Bassam Farran; Thomas M Caparrotta; Luke A K Blackbourn; Joseph Mellor; Ioanna Thoma; Naveed Sattar; Sarah H Wild; Soffia Gudbjörnsdottir; Helen M Colhoun
Journal:  Diabetologia       Date:  2021-06-09       Impact factor: 10.122

  7 in total

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