Literature DB >> 29974317

Microsatellite loci obtained by next generation sequencing on the sablefish (Anoplopoma fimbria).

Adonaji Madeleine Orozco-Ruiz1, Carolina Galván-Tirado1, Svetlana Yu Orlova2, Alexei M Orlov2,3,4,5,6, Francisco Javier García-De León7.   

Abstract

Eleven microsatellite loci were developed and characterized for the sablefish, Anoplopoma fimbria. The markers were identified from sequences obtained by next generation sequencing. Thirty samples from Aleutians Islands were genotyped. The amplifications were performed with three different annealing temperature and amplification products were visualized in ABI 3500 Genetic Analyzer. No evidence for scoring errors was detected by stuttering or due large allele dropout and neither of the loci presented a high null allele frequency (> 0.2). The number means of alleles per locus was of 12.21 and mean of observed and expected heterozygosity were of 0.60 and 0.75 respectively. The sablefish represents a resource of high commercial value on the coasts of Japan, Russia, Canada and west coast of the United States and these new primers could be useful to future diversity and structure population studies.

Entities:  

Keywords:  Genetic diversity; Microsatellites; Next generation sequencing; Sablefish

Mesh:

Substances:

Year:  2018        PMID: 29974317     DOI: 10.1007/s11033-018-4226-4

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  9 in total

Review 1.  Applications of next generation sequencing in molecular ecology of non-model organisms.

Authors:  R Ekblom; J Galindo
Journal:  Heredity (Edinb)       Date:  2010-12-08       Impact factor: 3.821

2.  Panmixia in the European eel: a matter of time...

Authors:  Johan Dannewitz; Gregory E Maes; Leif Johansson; Håkan Wickström; Filip A M Volckaert; Torbjörn Järvi
Journal:  Proc Biol Sci       Date:  2005-06-07       Impact factor: 5.349

3.  Microsatellite null alleles and estimation of population differentiation.

Authors:  Marie-Pierre Chapuis; Arnaud Estoup
Journal:  Mol Biol Evol       Date:  2006-12-05       Impact factor: 16.240

4.  Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows.

Authors:  Laurent Excoffier; Heidi E L Lischer
Journal:  Mol Ecol Resour       Date:  2010-03-01       Impact factor: 7.090

5.  msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design.

Authors:  Brant C Faircloth
Journal:  Mol Ecol Resour       Date:  2008-01       Impact factor: 7.090

6.  ANALYZING TABLES OF STATISTICAL TESTS.

Authors:  William R Rice
Journal:  Evolution       Date:  1989-01       Impact factor: 3.694

7.  Panmixia in a Critically Endangered Fish: The Totoaba (Totoaba macdonaldi) in the Gulf of California.

Authors:  Fausto Valenzuela-Quiñonez; Juan A De-Anda-Montañez; Elizabeth Gilbert-Horvath; John Carlos Garza; Francisco J García-De León
Journal:  J Hered       Date:  2016-07-27       Impact factor: 2.645

8.  Primer3--new capabilities and interfaces.

Authors:  Andreas Untergasser; Ioana Cutcutache; Triinu Koressaar; Jian Ye; Brant C Faircloth; Maido Remm; Steven G Rozen
Journal:  Nucleic Acids Res       Date:  2012-06-22       Impact factor: 16.971

9.  Reproductive life history of sablefish (Anoplopoma fimbria) from the U.S. Washington coast.

Authors:  José M Guzmán; J Adam Luckenbach; Mollie A Middleton; Kenneth C Massee; Cortney Jensen; Frederick W Goetz; Andrew J Jasonowicz; Penny Swanson
Journal:  PLoS One       Date:  2017-09-08       Impact factor: 3.240

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.