Literature DB >> 29972785

A Live-Cell Imaging Approach for Measuring DNA Replication Rates.

Daniel Dovrat1, Danielle Dahan1, Shachar Sherman1, Ioannis Tsirkas1, Natalie Elia2, Amir Aharoni3.   

Abstract

We describe a simple and direct approach to measure the progression of single DNA replication forks in living cells by monitoring two fluorescently labeled loci downstream of an origin of replication. We employ this approach to investigate the roles of several leading and lagging strand factors in overall replisome function and show that fork progression is strongly dependent on proper maturation of Okazaki fragments. We also demonstrate how related cellular phenotypes, such as cell-cycle progression and the dynamics of sister chromatid cohesion, may be simultaneously monitored and correlated to DNA replication at the single-cell level.
Copyright © 2018 The Author(s). Published by Elsevier Inc. All rights reserved.

Keywords:  DNA replication; FROS; Okazaki fragment maturation; live-cell imaging; sister chromatid cohesion

Mesh:

Substances:

Year:  2018        PMID: 29972785     DOI: 10.1016/j.celrep.2018.06.018

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  8 in total

1.  Visualizing Active Replication Regions in S-Phase Chromosomes.

Authors:  Eisuke Gotoh
Journal:  Methods Mol Biol       Date:  2023

Review 2.  Imaging of DNA and RNA in Living Eukaryotic Cells to Reveal Spatiotemporal Dynamics of Gene Expression.

Authors:  Hanae Sato; Sulagna Das; Robert H Singer; Maria Vera
Journal:  Annu Rev Biochem       Date:  2020-03-16       Impact factor: 23.643

3.  Cac1 WHD and PIP domains have distinct roles in replisome progression and genomic stability.

Authors:  Ioannis Tsirkas; Daniel Dovrat; Yang Lei; Angeliki Kalyva; Diana Lotysh; Qing Li; Amir Aharoni
Journal:  Curr Genet       Date:  2020-10-06       Impact factor: 3.886

4.  Pif1 is essential for efficient replisome progression through lagging strand G-quadruplex DNA secondary structures.

Authors:  Danielle Dahan; Ioannis Tsirkas; Daniel Dovrat; Melanie A Sparks; Saurabh P Singh; Roberto Galletto; Amir Aharoni
Journal:  Nucleic Acids Res       Date:  2018-12-14       Impact factor: 16.971

5.  Replication dynamics of individual loci in single living cells reveal changes in the degree of replication stochasticity through S phase.

Authors:  Bénédicte Duriez; Sabarinadh Chilaka; Jean-François Bercher; Eslande Hercul; Marie-Noëlle Prioleau
Journal:  Nucleic Acids Res       Date:  2019-06-04       Impact factor: 16.971

6.  Transcription-replication coordination revealed in single live cells.

Authors:  Ioannis Tsirkas; Daniel Dovrat; Manikandan Thangaraj; Ineke Brouwer; Amit Cohen; Zohar Paleiov; Michael M Meijler; Tineke Lenstra; Amir Aharoni
Journal:  Nucleic Acids Res       Date:  2022-02-28       Impact factor: 16.971

7.  Synergistic Coordination of Chromatin Torsional Mechanics and Topoisomerase Activity.

Authors:  Tung T Le; Xiang Gao; Seong Ha Park; Jaeyoon Lee; James T Inman; Joyce H Lee; Jessica L Killian; Ryan P Badman; James M Berger; Michelle D Wang
Journal:  Cell       Date:  2019-10-17       Impact factor: 41.582

Review 8.  Replication of G Quadruplex DNA.

Authors:  Leticia Koch Lerner; Julian E Sale
Journal:  Genes (Basel)       Date:  2019-01-29       Impact factor: 4.096

  8 in total

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