Literature DB >> 29971737

Novel anelloviruses identified in buccal swabs of Antarctic fur seals.

Adele Crane1, Michael E Goebel2, Simona Kraberger3, Anne C Stone4,5, Arvind Varsani6,7,8.   

Abstract

Viral diversity associated with Antarctic wildlife remains poorly studied. Nonetheless, over the past 5 years, there has been a concerted effort using viral metagenomics approaches to identify and characterize viruses associated with Antarctic pinniped and avian species. Here we used a viral metagenomics approach to identify circular DNA viruses in buccal swab samples from Antarctic fur seals (Arctocephalus gazella) breeding on Livingston Island, Antarctica during the 2016/2017 field season. We identified two new lineages of anelloviruses, torque teno Arctocephalus gazella virus (TTAgV)-1 (2083 nts) and -2 (2127-2143 nts), which are most closely related to and cluster with a previously identified anellovirus associated with California sea lions (Zalophus californianus) sharing ~ 60% genome-wide pairwise identity. The ORF1 of TTAgVs share 26-41% amino acid similarity to the ORF1 of other previously identified pinniped-associated anelloviruses.

Entities:  

Keywords:  Anelloviridae; Antarctica; Arctocephalus gazella; Pinniped; SsDNA virus

Mesh:

Year:  2018        PMID: 29971737     DOI: 10.1007/s11262-018-1585-9

Source DB:  PubMed          Journal:  Virus Genes        ISSN: 0920-8569            Impact factor:   2.332


  36 in total

1.  Diverse papillomaviruses identified in Weddell seals.

Authors:  Zoe E Smeele; Jennifer M Burns; Koenraad Van Doorsaler; Rafaela S Fontenele; Kara Waits; Daisy Stainton; Michelle R Shero; Roxanne S Beltran; Amy L Kirkham; Rachel Berngartt; Simona Kraberger; Arvind Varsani
Journal:  J Gen Virol       Date:  2018-02-22       Impact factor: 3.891

2.  Metagenomic identification of a novel anellovirus in Pacific harbor seal (Phoca vitulina richardsii) lung samples and its detection in samples from multiple years.

Authors:  Terry Fei Fan Ng; Elizabeth Wheeler; Denise Greig; Thomas B Waltzek; Frances Gulland; Mya Breitbart
Journal:  J Gen Virol       Date:  2011-03-14       Impact factor: 3.891

Review 3.  Classification of TTV and related viruses (anelloviruses).

Authors:  P Biagini
Journal:  Curr Top Microbiol Immunol       Date:  2009       Impact factor: 4.291

4.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

Review 5.  Unraveling the puzzle of human anellovirus infections by comparison with avian infections with the chicken anemia virus.

Authors:  I Davidson; L M Shulman
Journal:  Virus Res       Date:  2008-08-09       Impact factor: 3.303

6.  SDT: a virus classification tool based on pairwise sequence alignment and identity calculation.

Authors:  Brejnev Muhizi Muhire; Arvind Varsani; Darren Patrick Martin
Journal:  PLoS One       Date:  2014-09-26       Impact factor: 3.240

7.  Novel Avulaviruses in Penguins, Antarctica.

Authors:  Víctor Neira; Rodrigo Tapia; Claudio Verdugo; Gonzalo Barriga; Sunil Mor; Terry Fei Fan Ng; Victoria García; José Del Río; Pedro Rodrigues; Cristóbal Briceño; Rafael A Medina; Daniel González-Acuña
Journal:  Emerg Infect Dis       Date:  2017-07       Impact factor: 6.883

8.  Diverse and highly recombinant anelloviruses associated with Weddell seals in Antarctica.

Authors:  Elizabeth Fahsbender; Jennifer M Burns; Stacy Kim; Simona Kraberger; Greg Frankfurter; Alice A Eilers; Michelle R Shero; Roxanne Beltran; Amy Kirkham; Robert McCorkell; Rachel K Berngartt; Maketalena F Male; Grant Ballard; David G Ainley; Mya Breitbart; Arvind Varsani
Journal:  Virus Evol       Date:  2017-07-19

9.  Fish polyomaviruses belong to two distinct evolutionary lineages.

Authors:  Koenraad Van Doorslaer; Simona Kraberger; Charlotte Austin; Kata Farkas; Melissa Bergeman; Emma Paunil; William Davison; Arvind Varsani
Journal:  J Gen Virol       Date:  2018-03-08       Impact factor: 3.891

10.  Novel B19-like parvovirus in the brain of a harbor seal.

Authors:  Rogier Bodewes; Ana Rubio García; Lidewij C M Wiersma; Sarah Getu; Martijn Beukers; Claudia M E Schapendonk; Peter R W A van Run; Marco W G van de Bildt; Marjolein J Poen; Nynke Osinga; Guillermo J Sánchez Contreras; Thijs Kuiken; Saskia L Smits; Albert D M E Osterhaus
Journal:  PLoS One       Date:  2013-11-05       Impact factor: 3.240

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  1 in total

1.  Coinfections of Novel Polyomavirus, Anelloviruses and a Recombinant Strain of Myxoma Virus-MYXV-Tol Identified in Iberian Hares.

Authors:  Ana Águeda-Pinto; Simona Kraberger; Michael C Lund; Christian Gortázar; Grant McFadden; Arvind Varsani; Pedro J Esteves
Journal:  Viruses       Date:  2020-03-20       Impact factor: 5.048

  1 in total

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