| Literature DB >> 29970136 |
Yuqi Shen1, Nuo Si1, Zhe Liu2, Fang Liu1, Xiaolu Meng1, Ying Zhang3, Xue Zhang4,5.
Abstract
BACKGROUND: Split hand/foot malformation (SHFM) is a genetically heterogeneous limb malformation with variable expressivity. SHFM with tibia or femur aplasia is called SHFM with long bone deficiency (SHFLD). 17p13.3 duplications containing BHLHA9 are associated with SHFLD. Cases with variable SHFLD phenotype and different 17p13.3 duplicated regions are reported. The severity of long bone defect could not be simply explained by BHLHA9 overdosage or 17p13.3 duplication.Entities:
Keywords: 17p13.3 genomic rearrangement; BHLHA9; Split hand/foot malformation with long bone deficiency
Mesh:
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Year: 2018 PMID: 29970136 PMCID: PMC6029155 DOI: 10.1186/s13023-018-0838-y
Source DB: PubMed Journal: Orphanet J Rare Dis ISSN: 1750-1172 Impact factor: 4.123
Limb features of family members
| Individual | Gender | Upper limbs | Lower limbs | Phenotype | 17p13.3 genomic rearrangement | ||
|---|---|---|---|---|---|---|---|
| Left | Right | Left | Right | ||||
| I1 | F | Ectrodactyly with a central cleft | Ectrodactyly with a central cleft | Normal | Normal | SHFM | Y |
| II1 | M | Ectrodactyly with a central cleft | Forearm reduction defect | Femora hypoplasia, lower leg reduction defect | Femora hypoplasia, lower leg reduction defect | SHFLD | Y |
| II2 | F | Unilateral ectrodactyly with a central cleft | Normal | Normal | SHFM | NT | |
| II4 | F | Normal | Normal | Normal | Normal | Normal | N |
| II6 | F | Normal | Ectrodactyly with a central cleft, clinodactyly in the third and fourth digits | Normal | Normal | SHFM | Y |
| II8 | F | Normal | Syndactyly | Normal | Normal | SHFM | Y |
| III6 | F | Normal | Normal | Normal | Normal | Carrier | Y |
| III8 | M | Normal | Normal | Normal | Normal | Carrier | Y |
| III9 | F | Normal | Normal | Normal | Normal | Normal | N |
| IV3 | F | Ectrodactyly and syndactyly with a central cleft | Ectrodactyly and syndactyly with a central cleft | Leg flexion deformity | Leg flexion deformity | SHFLD? | NT |
| IV4 | NA | Ectrodactyly, metacarpale reduction defect | Ectrodactyly, metacarpale reduction defect | Tibia or fibula reduction defect, leg flexion deformity | Tibia or fibula reduction defect, leg flexion deformity | SHFLD | NT |
| IV5 | M | Syndactyly | Normal | Normal | Normal | SHFM | Y |
| IV6 | M | Split hand between index and other three fingers | Normal | Normal | Normal | SHFM | Y |
F, female; M, male; NA, not available; Y, yes; N, no; NT, not tested
Fig. 1Pedigree and limb defects of affected subjects. a Pedigree showing dominant inheritance with reduced penetrance. b Ectrodactyly with split hand of patient I1. c-d Ectrodactyly with split left hand of II1 (c). The hypoplastic right forearm with no hand, ulna and radius of II1 (d). Patient II1 also affected with symmetric hypoplastic femora and absence of bilateral lower legs. e Unilateral ectrodactyly with split hand of II6. f. Unilateral clinodactyly in middle digit of II8. g Abnormal left split hand of the aborted fetus IV6
Fig. 2Identification and validation of 17p13.3 genomic rearrangement. a Array CGH results (GRCh37/hg19 build) showed copy number gain at the chromosome 17p13.3 locus. A large duplication was identified here and part of this region encompassing ABR1 and BHLHA9 manifested as triplication. The blue and the red dots denote amplification and deletion, respectively. The log ratio (Y axis) demonstrated by the blue dots indicated the presence of increased copies of this region. Ratios around + 0.5 and around + 1.0 indicate the presence of three and four copies of its corresponding region, respectively. b DNA copy numbers of 17p13.3 genomic rearrangement region detected by qPCR assays. Primers locations are indicated at the bottom of a (black bars). c DNA copy number of BHLHA9 detected by qPCR assays. All the normal subjects except III6 and III8 in this family show normal copy number (white bars). All the affected individuals show increased copy numbers (black bars). C1 and C2 are two normal non-familial individuals, which represent a male and a female respectively
Fig. 3Schematic overview of the 17p13.3 duplications previously reported and identified in our study (hg19). All the twenty-two blue blocks denote the previously reported duplicated regions. The lower red block denotes the identified duplication and the grey block denotes the identified triplication in our study. The complicated duplication found in our study contained a wider telocentric region than in previously reported 17p13.3 duplications