Literature DB >> 29968462

Phosphorothioated Primers Lead to Loop-Mediated Isothermal Amplification at Low Temperatures.

Sheng Cai1, Cheulhee Jung2, Sanchita Bhadra3, Andrew D Ellington3.   

Abstract

Loop-mediated isothermal amplification (LAMP) is an extremely powerful tool for the detection of nucleic acids with high sensitivity and specificity. However, LAMP shows optimal performance at around 65 °C, which limits applications in point-of-care-testing (POCT). Here, we have developed a version of LAMP that uses phosphorothioated primers (PS-LAMP) to enable more efficient hairpin formation and extension at the termini of growing concatamers, and that therefore works at much lower temperatures. By including additional factors such as chaotropes (urea) and single-stranded DNA binding protein (SSB), the sensitivities and selectivities for amplicon detection with PS-LAMP at 40 °C were comparable with a regular LAMP reaction at 65 °C.

Entities:  

Year:  2018        PMID: 29968462     DOI: 10.1021/acs.analchem.8b02062

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  15 in total

1.  Solid-Phase Microextraction Enables Isolation of BRAF V600E Circulating Tumor DNA from Human Plasma for Detection with a Molecular Beacon Loop-Mediated Isothermal Amplification Assay.

Authors:  Marcelino Varona; Derek R Eitzmann; Darshna Pagariya; Robbyn K Anand; Jared L Anderson
Journal:  Anal Chem       Date:  2020-01-28       Impact factor: 6.986

2.  Electrochemical lead(II) biosensor by using an ion-dependent split DNAzyme and a template-free DNA extension reaction for signal amplification.

Authors:  Li Zhang; Hanmei Deng; Ruo Yuan; Yali Yuan
Journal:  Mikrochim Acta       Date:  2019-10-24       Impact factor: 5.833

3.  High-Surety Isothermal Amplification and Detection of SARS-CoV-2.

Authors:  Sanchita Bhadra; Timothy E Riedel; Simren Lakhotia; Nicholas D Tran; Andrew D Ellington
Journal:  mSphere       Date:  2021-05-19       Impact factor: 4.389

4.  Ultrasensitive nucleic acid detection based on phosphorothioated hairpin-assisted isothermal amplification.

Authors:  Yujin Jung; Jayeon Song; Hyun Gyu Park
Journal:  Sci Rep       Date:  2021-04-16       Impact factor: 4.379

Review 5.  An Insight Into Detection Pathways/Biosensors of Highly Infectious Coronaviruses.

Authors:  Mehrnaz Entesari; Mina Zamani; Mohammad Heidarizadeh; Rasoul Moradi; Fatemeh Khakdan; Fariba Rafiei
Journal:  Mol Biotechnol       Date:  2021-10-16       Impact factor: 2.860

Review 6.  Recent advances and perspectives of nucleic acid detection for coronavirus.

Authors:  Minzhe Shen; Ying Zhou; Jiawei Ye; Abdu Ahmed Abdullah Al-Maskri; Yu Kang; Su Zeng; Sheng Cai
Journal:  J Pharm Anal       Date:  2020-03-01

7.  Differential DNA accessibility to polymerase enables 30-minute phenotypic β-lactam antibiotic susceptibility testing of carbapenem-resistant Enterobacteriaceae.

Authors:  Nathan G Schoepp; Eric J Liaw; Alexander Winnett; Emily S Savela; Omai B Garner; Rustem F Ismagilov
Journal:  PLoS Biol       Date:  2020-03-19       Impact factor: 8.029

8.  A signal-flexible gene diagnostic strategy coupling loop-mediated isothermal amplification with hybridization chain reaction.

Authors:  Qing Dong; Quanyi Liu; Lulu Guo; Dan Li; Xudong Shang; Bingling Li; Yan Du
Journal:  Anal Chim Acta       Date:  2019-06-29       Impact factor: 6.558

Review 9.  Recent advances in the nucleic acid-based diagnostic tool for coronavirus.

Authors:  Pranav Kumar Prabhakar; Jyoti Lakhanpal
Journal:  Mol Biol Rep       Date:  2020-10-06       Impact factor: 2.316

Review 10.  Advances in Viral Diagnostic Technologies for Combating COVID-19 and Future Pandemics.

Authors:  Ninghao Zhu; Pak Kin Wong
Journal:  SLAS Technol       Date:  2020-08-24       Impact factor: 3.047

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