Literature DB >> 29968112

Coordination numbers in hydrated Cu(II) ions.

Alejandra Monjaraz-Rodríguez1, Mariano Rodriguez-Bautista1, Jorge Garza1, Rafael A Zubillaga1, Rubicelia Vargas2.   

Abstract

The potential energy surface of [Cu(H2O)n]2+ clusters with n = 12, 16, and 18 was explored by using a modified version of the simulated annealing method. Such exploration was carried out by using the PM7 semiempirical method to obtain around 100,000 isomers, which provide candidates to be optimized with PBE0-D3, M06-2X, and BHLYP exchange-correlation functionals coupled with the 6-311++G** basis set. These methods based on the Kohn-Sham approach delivered isomers with coordination numbers of 4, 5, and 6. The analysis used to obtain coordination numbers was based on geometrical parameters and the quantum theory of atoms in molecules (QTAIM) approach. Our methodology found only one isomer with fourfold coordination and its probabilities to appear in these clusters are quite small for high temperatures. The procedure used in this article predicts important populations of fivefold and sixfold coordination clusters, in fact, the fivefold coordination dominates for PBE0-D3 and BHLYP methods, although the sixfold coordination starts to be important when the number of water molecules is increased. The nature of axial and equatorial contacts is discussed in the context of the QTAIM and the noncovalent interaction index (NCI), which gives a clear classification of such orientations. Also, these methods suggest a partial covalent interaction between the Cu2+ and water molecules in both positions; equatorial and axial.

Entities:  

Keywords:  Copper ion; DFT; Hydrated copper; Isomers searching; NCI; QTAIM

Year:  2018        PMID: 29968112     DOI: 10.1007/s00894-018-3725-5

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  21 in total

1.  First solvation shell of the Cu(II) aqua ion: evidence for fivefold coordination.

Authors:  A Pasquarello; I Petri; P S Salmon; O Parisel; R Car; E Toth; D H Powell; H E Fischer; L Helm; A Merbach
Journal:  Science       Date:  2001-02-02       Impact factor: 47.728

2.  NCIPLOT: a program for plotting non-covalent interaction regions.

Authors:  Julia Contreras-García; Erin R Johnson; Shahar Keinan; Robin Chaudret; Jean-Philip Piquemal; David N Beratan; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2011-03-08       Impact factor: 6.006

3.  Influence of electron correlation effects on the solvation of Cu2+.

Authors:  Christian F Schwenk; Bernd M Rode
Journal:  J Am Chem Soc       Date:  2004-10-13       Impact factor: 15.419

4.  New scale factors for harmonic vibrational frequencies using the B3LYP density functional method with the triple-zeta basis set 6-311+G(d,p).

Authors:  M P Andersson; P Uvdal
Journal:  J Phys Chem A       Date:  2005-03-31       Impact factor: 2.781

5.  Effect of the damping function in dispersion corrected density functional theory.

Authors:  Stefan Grimme; Stephan Ehrlich; Lars Goerigk
Journal:  J Comput Chem       Date:  2011-03-01       Impact factor: 3.376

6.  Revealing noncovalent interactions.

Authors:  Erin R Johnson; Shahar Keinan; Paula Mori-Sánchez; Julia Contreras-García; Aron J Cohen; Weitao Yang
Journal:  J Am Chem Soc       Date:  2010-05-12       Impact factor: 15.419

7.  The solution structure of [Cu(aq)]2+ and its implications for rack-induced bonding in blue copper protein active sites.

Authors:  Patrick Frank; Maurizio Benfatto; Robert K Szilagyi; Paola D'Angelo; Stefano Della Longa; Keith O Hodgson
Journal:  Inorg Chem       Date:  2005-03-21       Impact factor: 5.165

8.  Stochastic search of the quantum conformational space of small lithium and bimetallic lithium-sodium clusters.

Authors:  Jhon F Pérez; Elizabeth Florez; Cacier Z Hadad; Patricio Fuentealba; Albeiro Restrepo
Journal:  J Phys Chem A       Date:  2008-06-03       Impact factor: 2.781

9.  The solvation of Cu2+ with gas-phase clusters of water and ammonia.

Authors:  Bridgette J Duncombe; Khadar Duale; Annabelle Buchanan-Smith; Anthony J Stace
Journal:  J Phys Chem A       Date:  2007-05-31       Impact factor: 2.781

10.  Exploration of Binding Interactions of Cu(2+) with d-Penicillamine and its O- and Se- Analogues in Both Gas and Aqueous Phases: A Theoretical Approach.

Authors:  Tamalika Ash; Tanay Debnath; Tahamida Banu; Abhijit K Das
Journal:  J Phys Chem B       Date:  2016-03-31       Impact factor: 2.991

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