Literature DB >> 29967244

Histone Chaperone Asf1 Is Required for the Establishment of Repressive Chromatin in Schizosaccharomyces pombe fbp1 Gene Repression.

Miki Umeda1, Chiaki Tsunekawa1, Satoshi Senmatsu1, Ryuta Asada1, Takuya Abe1, Kunihiro Ohta2,3, Charles S Hoffman4, Kouji Hirota5.   

Abstract

The arrangement of nucleosomes in chromatin plays a role in transcriptional regulation by restricting the accessibility of transcription factors and RNA polymerase II to cis-acting elements and promoters. For gene activation, the chromatin structure is altered to an open configuration. The mechanism for this process has been extensively analyzed. However, the mechanism by which repressive chromatin is reconstituted to terminate transcription has not been fully elucidated. Here, we investigated the mechanisms by which chromatin is reconstituted in the fission yeast Schizosaccharomyces pombefbp1 gene, which is robustly induced upon glucose starvation but tightly repressed under glucose-rich conditions. We found that the chromatin structure in the region upstream from fbp1 is closed by a two-step process. When cells are returned to glucose-rich medium following glucose starvation, changes in the nucleosome pattern alter the chromatin configuration at the transcription factor binding site to an inaccessible state, after which the nucleosome density upstream from fbp1 gradually increases via histone loading. Interestingly, this histone loading was observed in the absence of the Tup family corepressors Tup11 and Tup12. Analysis of strains carrying either gene disruptions or mutations affecting nine fission yeast histone chaperone genes demonstrated that the histone chaperone Asf1 induces nucleosome loading during glucose repression. These data establish a previously unappreciated chromatin reconstitution mechanism in fbp1 repression.
Copyright © 2018 American Society for Microbiology.

Entities:  

Keywords:  Schizosaccharomyces pombe; Tup family corepressor; chromatin repression; fbp1; histone chaperone

Mesh:

Substances:

Year:  2018        PMID: 29967244      PMCID: PMC6113601          DOI: 10.1128/MCB.00194-18

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  48 in total

1.  Tup1-Ssn6 interacts with multiple class I histone deacetylases in vivo.

Authors:  Judith K Davie; Diane G Edmondson; Cherie B Coco; Sharon Y R Dent
Journal:  J Biol Chem       Date:  2003-10-02       Impact factor: 5.157

2.  Redundant mechanisms are used by Ssn6-Tup1 in repressing chromosomal gene transcription in Saccharomyces cerevisiae.

Authors:  Zhengjian Zhang; Joseph C Reese
Journal:  J Biol Chem       Date:  2004-07-14       Impact factor: 5.157

3.  Reciprocal nuclear shuttling of two antagonizing Zn finger proteins modulates Tup family corepressor function to repress chromatin remodeling.

Authors:  Kouji Hirota; Charles S Hoffman; Kunihiro Ohta
Journal:  Eukaryot Cell       Date:  2006-10-06

4.  Interplay between chromatin modulators and histone acetylation regulates the formation of accessible chromatin in the upstream regulatory region of fission yeast fbp1.

Authors:  Akira Adachi; Satoshi Senmatsu; Ryuta Asada; Takuya Abe; Charles S Hoffman; Kunihiro Ohta; Kouji Hirota
Journal:  Genes Genet Syst       Date:  2017-06-30       Impact factor: 1.517

5.  Antagonistic controls of chromatin and mRNA start site selection by Tup family corepressors and the CCAAT-binding factor.

Authors:  Ryuta Asada; Naomichi Takemata; Charles S Hoffman; Kunihiro Ohta; Kouji Hirota
Journal:  Mol Cell Biol       Date:  2014-12-22       Impact factor: 4.272

6.  Glucose repression of transcription of the Schizosaccharomyces pombe fbp1 gene occurs by a cAMP signaling pathway.

Authors:  C S Hoffman; F Winston
Journal:  Genes Dev       Date:  1991-04       Impact factor: 11.361

7.  Ssn6-Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae.

Authors:  Zhengjian Zhang; Joseph C Reese
Journal:  EMBO J       Date:  2004-04-29       Impact factor: 11.598

8.  The Schizosaccharomyces pombe HIRA-like protein Hip1 is required for the periodic expression of histone genes and contributes to the function of complex centromeres.

Authors:  Chris Blackwell; Kate A Martin; Amanda Greenall; Alison Pidoux; Robin C Allshire; Simon K Whitehall
Journal:  Mol Cell Biol       Date:  2004-05       Impact factor: 4.272

Review 9.  Analysis of chromatin structure at meiotic DSB sites in yeasts.

Authors:  Kouji Hirota; Tomoyuki Fukuda; Takatomi Yamada; Kunihiro Ohta
Journal:  Methods Mol Biol       Date:  2009

10.  The chromatin-remodeling factor FACT contributes to centromeric heterochromatin independently of RNAi.

Authors:  Erwan Lejeune; Miriam Bortfeld; Sharon A White; Alison L Pidoux; Karl Ekwall; Robin C Allshire; Andreas G Ladurner
Journal:  Curr Biol       Date:  2007-07-05       Impact factor: 10.834

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  3 in total

1.  The transcription factor PRO44 and the histone chaperone ASF1 regulate distinct aspects of multicellular development in the filamentous fungus Sordaria macrospora.

Authors:  David Immanuel Schumacher; Ramona Lütkenhaus; Florian Altegoer; Ines Teichert; Ulrich Kück; Minou Nowrousian
Journal:  BMC Genet       Date:  2018-12-13       Impact factor: 2.797

2.  Topoisomerase activity is linked to altered nucleosome positioning and transcriptional regulation in the fission yeast fbp1 gene.

Authors:  Ryuta Asada; Satoshi Senmatsu; Ben Montpetit; Kouji Hirota
Journal:  PLoS One       Date:  2020-11-12       Impact factor: 3.240

3.  Reciprocal stabilization of transcription factor binding integrates two signaling pathways to regulate fission yeast fbp1 transcription.

Authors:  Wakana Koda; Satoshi Senmatsu; Takuya Abe; Charles S Hoffman; Kouji Hirota
Journal:  Nucleic Acids Res       Date:  2021-09-27       Impact factor: 16.971

  3 in total

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