Literature DB >> 29967126

Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.

Manuel Tardaguila, Lorena de la Fuente, Cristina Marti, Cécile Pereira, Francisco Jose Pardo-Palacios, Hector Del Risco, Marc Ferrell, Maravillas Mellado, Marissa Macchietto, Kenneth Verheggen, Mariola Edelmann, Iakes Ezkurdia, Jesus Vazquez, Michael Tress, Ali Mortazavi, Lennart Martens, Susana Rodriguez-Navarro, Victoria Moreno-Manzano, Ana Conesa.   

Abstract

Year:  2018        PMID： 29967126      PMCID： PMC6028133          DOI： 10.1101/gr.239137.118

Source DB:  PubMed          Journal:  Genome Res        ISSN： 1088-9051            Impact factor:   9.043


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  22 in total

1.  HNRNPH1 destabilizes the G-quadruplex structures formed by G-rich RNA sequences that regulate the alternative splicing of an oncogenic fusion transcript.

Authors:  Tam Vo; Tayvia Brownmiller; Katherine Hall; Tamara L Jones; Sulbha Choudhari; Ioannis Grammatikakis; Katelyn R Ludwig; Natasha J Caplen
Journal:  Nucleic Acids Res       Date:  2022-06-24       Impact factor: 19.160

2.  Variation in leaf transcriptome responses to elevated ozone corresponds with physiological sensitivity to ozone across maize inbred lines.

Authors:  Adalena V Nanni; Alison M Morse; Jeremy R B Newman; Nicole E Choquette; Jessica M Wedow; Zihao Liu; Andrew D B Leakey; Ana Conesa; Elizabeth A Ainsworth; Lauren M McIntyre
Journal:  Genetics       Date:  2022-07-30       Impact factor: 4.402

3.  A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis.

Authors:  Runxuan Zhang; Richard Kuo; Max Coulter; Cristiane P G Calixto; Juan Carlos Entizne; Wenbin Guo; Yamile Marquez; Linda Milne; Stefan Riegler; Akihiro Matsui; Maho Tanaka; Sarah Harvey; Yubang Gao; Theresa Wießner-Kroh; Alejandro Paniagua; Martin Crespi; Katherine Denby; Asa Ben Hur; Enamul Huq; Michael Jantsch; Artur Jarmolowski; Tino Koester; Sascha Laubinger; Qingshun Quinn Li; Lianfeng Gu; Motoaki Seki; Dorothee Staiger; Ramanjulu Sunkar; Zofia Szweykowska-Kulinska; Shih-Long Tu; Andreas Wachter; Robbie Waugh; Liming Xiong; Xiao-Ning Zhang; Ana Conesa; Anireddy S N Reddy; Andrea Barta; Maria Kalyna; John W S Brown
Journal:  Genome Biol       Date:  2022-07-07       Impact factor: 17.906

4.  Single molecule, long-read Apoer2 sequencing identifies conserved and species-specific splicing patterns.

Authors:  Christina M Gallo; Adam T Labadorf; Angela Ho; Uwe Beffert
Journal:  Genomics       Date:  2022-02-19       Impact factor: 4.310

5.  High temporal resolution Nanopore sequencing dataset of SARS-CoV-2 and host cell RNAs.

Authors:  Dóra Tombácz; Ákos Dörmő; Gábor Gulyás; Zsolt Csabai; István Prazsák; Balázs Kakuk; Ákos Harangozó; István Jankovics; Béla Dénes; Zsolt Boldogkői
Journal:  Gigascience       Date:  2022-10-17       Impact factor: 7.658

6.  Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates.

Authors:  Adam Nunn; Isaac Rodríguez-Arévalo; Zenith Tandukar; Katherine Frels; Adrián Contreras-Garrido; Pablo Carbonell-Bejerano; Panpan Zhang; Daniela Ramos Cruz; Katharina Jandrasits; Christa Lanz; Anthony Brusa; Marie Mirouze; Kevin Dorn; David W Galbraith; Brice A Jarvis; John C Sedbrook; Donald L Wyse; Christian Otto; David Langenberger; Peter F Stadler; Detlef Weigel; M David Marks; James A Anderson; Claude Becker; Ratan Chopra
Journal:  Plant Biotechnol J       Date:  2022-02-06       Impact factor: 13.263

7.  tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing.

Authors:  Lorena de la Fuente; Ángeles Arzalluz-Luque; Manuel Tardáguila; Héctor Del Risco; Cristina Martí; Sonia Tarazona; Pedro Salguero; Raymond Scott; Alberto Lerma; Ana Alastrue-Agudo; Pablo Bonilla; Jeremy R B Newman; Shunichi Kosugi; Lauren M McIntyre; Victoria Moreno-Manzano; Ana Conesa
Journal:  Genome Biol       Date:  2020-05-18       Impact factor: 13.583

8.  Nanopore long-read RNA-seq and absolute quantification delineate transcription dynamics in early embryo development of an insect pest.

Authors:  Anthony Bayega; Spyros Oikonomopoulos; Maria-Eleni Gregoriou; Konstantina T Tsoumani; Antonis Giakountis; Yu Chang Wang; Kostas D Mathiopoulos; Jiannis Ragoussis
Journal:  Sci Rep       Date:  2021-04-12       Impact factor: 4.379

9.  Detection of aberrant splicing events in RNA-seq data using FRASER.

Authors:  Christian Mertes; Ines F Scheller; Vicente A Yépez; Muhammed H Çelik; Yingjiqiong Liang; Laura S Kremer; Mirjana Gusic; Holger Prokisch; Julien Gagneur
Journal:  Nat Commun       Date:  2021-01-22       Impact factor: 17.694

Review 10.  The third generation sequencing: the advanced approach to genetic diseases.

Authors:  Tiantian Xiao; Wenhao Zhou
Journal:  Transl Pediatr       Date:  2020-04
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