Literature DB >> 29967060

Bioinformat-Eggs: An Educational Primer for Use with "LIN-41 and OMA Ribonucleoprotein Complexes Mediate a Translational Repression-to-Activation Switch Controlling Oocyte Meiotic Maturation and the Oocyte-to-Embryo Transition in Caenorhabditis elegans".

Deborah Thurtle-Schmidt1, Te-Wen Lo2.   

Abstract

High-throughput sequencing and bioinformatic techniques have enhanced classical genetic analysis and are essential methods for geneticists. Tsukamoto and colleagues use numerous genomic and bioinformatics methods to explore the role of ribonucleoprotein complexes in regulating oocyte meiotic maturation, which is the transition between diakinesis and metaphase of meiosis I. This primer provides guidance for both educators and students as they read "LIN-41 and OMA Ribonucleoprotein Complexes Mediate a Translational Repression-to-Activation Switch Controlling Oocyte Meiotic Maturation and the Oocyte-to-Embryo Transition in Caenorhabditis elegans" The primer provides background information on the utility of the C. elegans germ line as a model for meiotic regulation, and further describes methods of bioinformatic analysis used to study translational and post-translational gene regulation. Additionally, the primer provides discussion questions and an active learning exercise designed to enhance student learning of critical genetic concepts.
Copyright © 2018 by the Genetics Society of America.

Entities:  

Keywords:  C. elegans germ line; education; high-throughput bioinformatic analysis; oocyte meiotic maturation; ribonucleoprotein complex

Mesh:

Substances:

Year:  2018        PMID: 29967060      PMCID: PMC6028262          DOI: 10.1534/genetics.118.301139

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  23 in total

Review 1.  High-throughput sequencing technologies.

Authors:  Jason A Reuter; Damek V Spacek; Michael P Snyder
Journal:  Mol Cell       Date:  2015-05-21       Impact factor: 17.970

2.  Purification of maturation-promoting factor, an intracellular regulator of early mitotic events.

Authors:  M J Lohka; M K Hayes; J L Maller
Journal:  Proc Natl Acad Sci U S A       Date:  1988-05       Impact factor: 11.205

Review 3.  The regulation of spermatogenesis and sperm function in nematodes.

Authors:  Ronald E Ellis; Gillian M Stanfield
Journal:  Semin Cell Dev Biol       Date:  2014-04-06       Impact factor: 7.727

4.  Two zinc finger proteins, OMA-1 and OMA-2, are redundantly required for oocyte maturation in C. elegans.

Authors:  M R Detwiler; M Reuben; X Li; E Rogers; R Lin
Journal:  Dev Cell       Date:  2001-08       Impact factor: 12.270

Review 5.  Control of oocyte meiotic maturation in C. elegans.

Authors:  Gabriela Huelgas-Morales; David Greenstein
Journal:  Semin Cell Dev Biol       Date:  2017-12-26       Impact factor: 7.727

6.  Cyclin is a component of maturation-promoting factor from Xenopus.

Authors:  J Gautier; J Minshull; M Lohka; M Glotzer; T Hunt; J L Maller
Journal:  Cell       Date:  1990-02-09       Impact factor: 41.582

7.  SMG-ly knocking out gene expression in specific cells: an educational primer for use with "a novel strategy for cell-autonomous gene knockdown in caenorhabditis elegans defines a cell-specific function for the G-protein subunit GOA-1".

Authors:  Philip M Meneely; Jordana C Bloom
Journal:  Genetics       Date:  2013-12       Impact factor: 4.562

8.  The TRIM-NHL protein LIN-41 and the OMA RNA-binding proteins antagonistically control the prophase-to-metaphase transition and growth of Caenorhabditis elegans oocytes.

Authors:  Caroline A Spike; Donna Coetzee; Carly Eichten; Xin Wang; Dave Hansen; David Greenstein
Journal:  Genetics       Date:  2014-09-26       Impact factor: 4.562

9.  The cytoplasmic poly(A) polymerases GLD-2 and GLD-4 promote general gene expression via distinct mechanisms.

Authors:  Marco Nousch; Assa Yeroslaviz; Bianca Habermann; Christian R Eckmann
Journal:  Nucleic Acids Res       Date:  2014-09-12       Impact factor: 16.971

Review 10.  Molecular biology at the cutting edge: A review on CRISPR/CAS9 gene editing for undergraduates.

Authors:  Deborah M Thurtle-Schmidt; Te-Wen Lo
Journal:  Biochem Mol Biol Educ       Date:  2018-01-30       Impact factor: 1.160

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.