Literature DB >> 29967059

Recent Molecular Genetic Explorations of Caenorhabditis elegans MicroRNAs.

Victor Ambros1, Gary Ruvkun2,3.   

Abstract

MicroRNAs are small, noncoding RNAs that regulate gene expression at the post-transcriptional level in essentially all aspects of Caenorhabditis elegans biology. More than 140 genes that encode microRNAs in C. elegans regulate development, behavior, metabolism, and responses to physiological and environmental changes. Genetic analysis of C. elegans microRNA genes continues to enhance our fundamental understanding of how microRNAs are integrated into broader gene regulatory networks to control diverse biological processes, including growth, cell division, cell fate determination, behavior, longevity, and stress responses. As many of these microRNA sequences and the related processing machinery are conserved over nearly a billion years of animal phylogeny, the assignment of their functions via worm genetics may inform the functions of their orthologs in other animals, including humans. In vivo investigations are especially important for microRNAs because in silico extrapolation of their functions using mRNA target prediction programs can easily assign microRNAs to incorrect genetic pathways. At this mezzanine level of microRNA bioinformatic sophistication, genetic analysis continues to be the gold standard for pathway assignments.
Copyright © 2018 by the Genetics Society of America.

Entities:  

Keywords:  Argonaute; Caenorhabditis elegans; WormBook; miRISC; microRNA; mutant phenotypes

Mesh:

Substances:

Year:  2018        PMID: 29967059      PMCID: PMC6028246          DOI: 10.1534/genetics.118.300291

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  185 in total

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3.  Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding.

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4.  The mir-51 family of microRNAs functions in diverse regulatory pathways in Caenorhabditis elegans.

Authors:  John L Brenner; Benedict J Kemp; Allison L Abbott
Journal:  PLoS One       Date:  2012-05-16       Impact factor: 3.240

5.  Robust Distal Tip Cell Pathfinding in the Face of Temperature Stress Is Ensured by Two Conserved microRNAS in Caenorhabditis elegans.

Authors:  Samantha L Burke; Molly Hammell; Victor Ambros
Journal:  Genetics       Date:  2015-06-15       Impact factor: 4.562

6.  Splicing remodels the let-7 primary microRNA to facilitate Drosha processing in Caenorhabditis elegans.

Authors:  Vanessa Mondol; Byoung Chan Ahn; Amy E Pasquinelli
Journal:  RNA       Date:  2015-06-16       Impact factor: 4.942

7.  MicroRNA mir-34 provides robustness to environmental stress response via the DAF-16 network in C. elegans.

Authors:  Meltem Isik; T Keith Blackwell; Eugene Berezikov
Journal:  Sci Rep       Date:  2016-12-01       Impact factor: 4.379

8.  Post-developmental microRNA expression is required for normal physiology, and regulates aging in parallel to insulin/IGF-1 signaling in C. elegans.

Authors:  Nicolas J Lehrbach; Cecilia Castro; Kenneth J Murfitt; Cei Abreu-Goodger; Julian L Griffin; Eric A Miska
Journal:  RNA       Date:  2012-10-24       Impact factor: 4.942

9.  The embryonic mir-35 family of microRNAs promotes multiple aspects of fecundity in Caenorhabditis elegans.

Authors:  Katherine McJunkin; Victor Ambros
Journal:  G3 (Bethesda)       Date:  2014-07-21       Impact factor: 3.154

10.  miR-58 family and TGF-β pathways regulate each other in Caenorhabditis elegans.

Authors:  María Pilar de Lucas; Alberto G Sáez; Encarnación Lozano
Journal:  Nucleic Acids Res       Date:  2015-09-22       Impact factor: 16.971

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  20 in total

1.  Sperm fate is promoted by the mir-44 microRNA family in the Caenorhabditis elegans hermaphrodite germline.

Authors:  Katherine A Maniates; Benjamin S Olson; Allison L Abbott
Journal:  Genetics       Date:  2021-03-03       Impact factor: 4.562

2.  ALG-1 Influences Accurate mRNA Splicing Patterns in the Caenorhabditis elegans Intestine and Body Muscle Tissues by Modulating Splicing Factor Activities.

Authors:  Kasuen Kotagama; Anna L Schorr; Hannah S Steber; Marco Mangone
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3.  Feedback between a retinoid-related nuclear receptor and the let-7 microRNAs controls the pace and number of molting cycles in C. elegans.

Authors:  Ruhi Patel; Himani Galagali; John K Kim; Alison R Frand
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5.  miRISC Composition Determines Target Fates in Time and Space.

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Review 6.  piRNAs and endo-siRNAs: Small molecules with large roles in the nervous system.

Authors:  Maria C Ow; Sarah E Hall
Journal:  Neurochem Int       Date:  2021-05-31       Impact factor: 4.297

7.  Remodeling of the Caenorhabditis elegans non-coding RNA transcriptome by heat shock.

Authors:  William P Schreiner; Delaney C Pagliuso; Jacob M Garrigues; Jerry S Chen; Antti P Aalto; Amy E Pasquinelli
Journal:  Nucleic Acids Res       Date:  2019-10-10       Impact factor: 16.971

8.  Small RNAs in parasitic nematodes - forms and functions.

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Journal:  Parasitology       Date:  2019-12-17       Impact factor: 3.234

9.  The C. elegans miR-235 regulates the toxicity of graphene oxide via targeting the nuclear hormone receptor DAF-12 in the intestine.

Authors:  Tiantian Guo; Lu Cheng; Huimin Zhao; Yingying Liu; Yunhan Yang; Jie Liu; Qiuli Wu
Journal:  Sci Rep       Date:  2020-10-09       Impact factor: 4.379

10.  HRPK-1, a conserved KH-domain protein, modulates microRNA activity during Caenorhabditis elegans development.

Authors:  Li Li; Isana Veksler-Lublinsky; Anna Zinovyeva
Journal:  PLoS Genet       Date:  2019-10-04       Impact factor: 5.917

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