Literature DB >> 29960365

Solid harmonic wavelet scattering for predictions of molecule properties.

Michael Eickenberg1, Georgios Exarchakis1, Matthew Hirn2, Stéphane Mallat3, Louis Thiry1.   

Abstract

We present a machine learning algorithm for the prediction of molecule properties inspired by ideas from density functional theory (DFT). Using Gaussian-type orbital functions, we create surrogate electronic densities of the molecule from which we compute invariant "solid harmonic scattering coefficients" that account for different types of interactions at different scales. Multilinear regressions of various physical properties of molecules are computed from these invariant coefficients. Numerical experiments show that these regressions have near state-of-the-art performance, even with relatively few training examples. Predictions over small sets of scattering coefficients can reach a DFT precision while being interpretable.

Year:  2018        PMID: 29960365     DOI: 10.1063/1.5023798

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  8 in total

Review 1.  Machine Learning Force Fields and Coarse-Grained Variables in Molecular Dynamics: Application to Materials and Biological Systems.

Authors:  Paraskevi Gkeka; Gabriel Stoltz; Amir Barati Farimani; Zineb Belkacemi; Michele Ceriotti; John D Chodera; Aaron R Dinner; Andrew L Ferguson; Jean-Bernard Maillet; Hervé Minoux; Christine Peter; Fabio Pietrucci; Ana Silveira; Alexandre Tkatchenko; Zofia Trstanova; Rafal Wiewiora; Tony Lelièvre
Journal:  J Chem Theory Comput       Date:  2020-07-16       Impact factor: 6.006

2.  Uniformly accurate machine learning-based hydrodynamic models for kinetic equations.

Authors:  Jiequn Han; Chao Ma; Zheng Ma; Weinan E
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-16       Impact factor: 11.205

3.  Wavelet invariants for statistically robust multi-reference alignment.

Authors:  Matthew Hirn; Anna Little
Journal:  Inf inference       Date:  2020-08-13

4.  Learning to Make Chemical Predictions: the Interplay of Feature Representation, Data, and Machine Learning Methods.

Authors:  Mojtaba Haghighatlari; Jie Li; Farnaz Heidar-Zadeh; Yuchen Liu; Xingyi Guan; Teresa Head-Gordon
Journal:  Chem       Date:  2020-06-16       Impact factor: 22.804

Review 5.  Ab Initio Machine Learning in Chemical Compound Space.

Authors:  Bing Huang; O Anatole von Lilienfeld
Journal:  Chem Rev       Date:  2021-08-13       Impact factor: 60.622

6.  Geometric Wavelet Scattering Networks on Compact Riemannian Manifolds.

Authors:  Michael Perlmutter; Feng Gao; Guy Wolf; Matthew Hirn
Journal:  Proc Mach Learn Res       Date:  2020-07

7.  Dataset Construction to Explore Chemical Space with 3D Geometry and Deep Learning.

Authors:  Jianing Lu; Song Xia; Jieyu Lu; Yingkai Zhang
Journal:  J Chem Inf Model       Date:  2021-03-08       Impact factor: 4.956

8.  Towards exact molecular dynamics simulations with machine-learned force fields.

Authors:  Stefan Chmiela; Huziel E Sauceda; Klaus-Robert Müller; Alexandre Tkatchenko
Journal:  Nat Commun       Date:  2018-09-24       Impact factor: 14.919

  8 in total

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