Literature DB >> 29959279

Basis of dATP inhibition of RNRs.

Brandon L Greene1, Daniel G Nocera1, JoAnne Stubbe2,3.   

Abstract

Ribonucleotide reductases (RNRs) are essential enzymes producing de novo deoxynucleotide (dNTP) building blocks for DNA replication and repair and regulating dNTP pools important for fidelity of these processes. A new study reveals that the class Ia Escherichia coli RNR is regulated by dATP via stabilization of an inactive α4β4 quaternary structure, slowing formation of the active α2β2 structure. The results support the importance of the regulatory α4β4 complex providing insight in design of experiments to understand RNR regulation in vivo.
© 2018 Stubbe et al.

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Year:  2018        PMID: 29959279      PMCID: PMC6028962          DOI: 10.1074/jbc.H118.003717

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  10 in total

1.  Structural interconversions modulate activity of Escherichia coli ribonucleotide reductase.

Authors:  Nozomi Ando; Edward J Brignole; Christina M Zimanyi; Michael A Funk; Kenichi Yokoyama; Francisco J Asturias; Joanne Stubbe; Catherine L Drennan
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

2.  Generation of a stable, aminotyrosyl radical-induced α2β2 complex of Escherichia coli class Ia ribonucleotide reductase.

Authors:  Ellen C Minnihan; Nozomi Ando; Edward J Brignole; Lisa Olshansky; Johnathan Chittuluru; Francisco J Asturias; Catherine L Drennan; Daniel G Nocera; Joanne Stubbe
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-19       Impact factor: 11.205

3.  Disruption of an oligomeric interface prevents allosteric inhibition of Escherichia coli class Ia ribonucleotide reductase.

Authors:  Percival Yang-Ting Chen; Michael A Funk; Edward J Brignole; Catherine L Drennan
Journal:  J Biol Chem       Date:  2018-04-26       Impact factor: 5.157

4.  Novel mutator mutants of E. coli nrdAB ribonucleotide reductase: insight into allosteric regulation and control of mutation rates.

Authors:  Deepti Ahluwalia; Rachelle J Bienstock; Roel M Schaaper
Journal:  DNA Repair (Amst)       Date:  2012-03-13

5.  Structural basis for allosteric regulation of human ribonucleotide reductase by nucleotide-induced oligomerization.

Authors:  James Wesley Fairman; Sanath Ranjan Wijerathna; Md Faiz Ahmad; Hai Xu; Ryo Nakano; Shalini Jha; Jay Prendergast; R Martin Welin; Susanne Flodin; Annette Roos; Pär Nordlund; Zongli Li; Thomas Walz; Chris Godfrey Dealwis
Journal:  Nat Struct Mol Biol       Date:  2011-02-20       Impact factor: 15.369

6.  Clofarabine targets the large subunit (α) of human ribonucleotide reductase in live cells by assembly into persistent hexamers.

Authors:  Yimon Aye; Edward J Brignole; Marcus J C Long; Johnathan Chittuluru; Catherine L Drennan; Francisco J Asturias; JoAnne Stubbe
Journal:  Chem Biol       Date:  2012-07-27

7.  Pre-steady-state and steady-state kinetic analysis of E. coli class I ribonucleotide reductase.

Authors:  Jie Ge; Guixue Yu; Mark A Ator; JoAnne Stubbe
Journal:  Biochemistry       Date:  2003-09-02       Impact factor: 3.162

8.  Reversible, long-range radical transfer in E. coli class Ia ribonucleotide reductase.

Authors:  Ellen C Minnihan; Daniel G Nocera; Joanne Stubbe
Journal:  Acc Chem Res       Date:  2013-06-04       Impact factor: 22.384

Review 9.  DNA building blocks: keeping control of manufacture.

Authors:  Anders Hofer; Mikael Crona; Derek T Logan; Britt-Marie Sjöberg
Journal:  Crit Rev Biochem Mol Biol       Date:  2011-11-03       Impact factor: 8.250

10.  3.3-Å resolution cryo-EM structure of human ribonucleotide reductase with substrate and allosteric regulators bound.

Authors:  Edward J Brignole; Kuang-Lei Tsai; Johnathan Chittuluru; Haoran Li; Yimon Aye; Pawel A Penczek; JoAnne Stubbe; Catherine L Drennan; Francisco Asturias
Journal:  Elife       Date:  2018-02-20       Impact factor: 8.140

  10 in total
  3 in total

1.  Conformational Motions and Water Networks at the α/β Interface in E. coli Ribonucleotide Reductase.

Authors:  Clorice R Reinhardt; Pengfei Li; Gyunghoon Kang; JoAnne Stubbe; Catherine L Drennan; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2020-07-28       Impact factor: 15.419

Review 2.  Still no Rest for the Reductases: Ribonucleotide Reductase (RNR) Structure and Function: An Update.

Authors:  Marcus J C Long; Phillippe Ly; Yimon Aye
Journal:  Subcell Biochem       Date:  2022

3.  Glutamate Mediates Proton-Coupled Electron Transfer Between Tyrosines 730 and 731 in Escherichia coli Ribonucleotide Reductase.

Authors:  Clorice R Reinhardt; Elvira R Sayfutyarova; Jiayun Zhong; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2021-04-15       Impact factor: 15.419

  3 in total

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