Literature DB >> 29954933

A comprehensive inventory of TLX1 controlled long non-coding RNAs in T-cell acute lymphoblastic leukemia through polyA+ and total RNA sequencing.

Karen Verboom1,2, Wouter Van Loocke1,2, Pieter-Jan Volders1,2,3,4, Bieke Decaesteker1,2, Francisco Avila Cobos1,2,4, Simon Bornschein5,6, Charles E de Bock5,6, Zeynep Kalender Atak5,7, Emmanuelle Clappier8, Stein Aerts5,7, Jan Cools5,6, Jean Soulier8, Tom Taghon2,9, Pieter Van Vlierberghe1,2, Jo Vandesompele1,2,4, Frank Speleman1,2, Kaat Durinck10,2.   

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Year:  2018        PMID: 29954933      PMCID: PMC6269303          DOI: 10.3324/haematol.2018.190587

Source DB:  PubMed          Journal:  Haematologica        ISSN: 0390-6078            Impact factor:   9.941


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  15 in total

1.  Long noncoding RNA signatures define oncogenic subtypes in T-cell acute lymphoblastic leukemia.

Authors:  A Wallaert; K Durinck; W Van Loocke; I Van de Walle; F Matthijssens; P J Volders; F Avila Cobos; D Rombaut; P Rondou; P Mestdagh; J Vandesompele; B Poppe; T Taghon; J Soulier; P Van Vlierberghe; F Speleman
Journal:  Leukemia       Date:  2016-04-22       Impact factor: 11.528

2.  The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia.

Authors:  Kaat Durinck; Annelynn Wallaert; Inge Van de Walle; Wouter Van Loocke; Pieter-Jan Volders; Suzanne Vanhauwaert; Ellen Geerdens; Yves Benoit; Nadine Van Roy; Bruce Poppe; Jean Soulier; Jan Cools; Pieter Mestdagh; Jo Vandesompele; Pieter Rondou; Pieter Van Vlierberghe; Tom Taghon; Frank Speleman
Journal:  Haematologica       Date:  2014-10-24       Impact factor: 9.941

3.  Identification of novel lncRNAs regulated by the TAL1 complex in T-cell acute lymphoblastic leukemia.

Authors:  Phuong Cao Thi Ngoc; Shi Hao Tan; Tze King Tan; Min Min Chan; Zhenhua Li; Allen E J Yeoh; Daniel G Tenen; Takaomi Sanda
Journal:  Leukemia       Date:  2018-03-26       Impact factor: 11.528

4.  Characterization of the genome-wide TLX1 binding profile in T-cell acute lymphoblastic leukemia.

Authors:  K Durinck; W Van Loocke; J Van der Meulen; I Van de Walle; M Ongenaert; P Rondou; A Wallaert; C E de Bock; N Van Roy; B Poppe; J Cools; J Soulier; T Taghon; F Speleman; P Van Vlierberghe
Journal:  Leukemia       Date:  2015-06-25       Impact factor: 11.528

5.  G1/S transcriptional networks modulated by the HOX11/TLX1 oncogene of T-cell acute lymphoblastic leukemia.

Authors:  Irene Riz; Robert G Hawley
Journal:  Oncogene       Date:  2005-08-25       Impact factor: 9.867

6.  Selective inhibition of tumor oncogenes by disruption of super-enhancers.

Authors:  Jakob Lovén; Heather A Hoke; Charles Y Lin; Ashley Lau; David A Orlando; Christopher R Vakoc; James E Bradner; Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

7.  Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.

Authors:  Mitchell Guttman; Ido Amit; Manuel Garber; Courtney French; Michael F Lin; David Feldser; Maite Huarte; Or Zuk; Bryce W Carey; John P Cassady; Moran N Cabili; Rudolf Jaenisch; Tarjei S Mikkelsen; Tyler Jacks; Nir Hacohen; Bradley E Bernstein; Manolis Kellis; Aviv Regev; John L Rinn; Eric S Lander
Journal:  Nature       Date:  2009-02-01       Impact factor: 49.962

8.  Melanoma addiction to the long non-coding RNA SAMMSON.

Authors:  Eleonora Leucci; Roberto Vendramin; Marco Spinazzi; Patrick Laurette; Mark Fiers; Jasper Wouters; Enrico Radaelli; Sven Eyckerman; Carina Leonelli; Katrien Vanderheyden; Aljosja Rogiers; Els Hermans; Pieter Baatsen; Stein Aerts; Frederic Amant; Stefan Van Aelst; Joost van den Oord; Bart de Strooper; Irwin Davidson; Denis L J Lafontaine; Kris Gevaert; Jo Vandesompele; Pieter Mestdagh; Jean-Christophe Marine
Journal:  Nature       Date:  2016-03-24       Impact factor: 49.962

9.  Genomic characterization of pediatric T-cell acute lymphoblastic leukemia reveals novel recurrent driver mutations.

Authors:  Jean-François Spinella; Pauline Cassart; Chantal Richer; Virginie Saillour; Manon Ouimet; Sylvie Langlois; Pascal St-Onge; Thomas Sontag; Jasmine Healy; Mark D Minden; Daniel Sinnett
Journal:  Oncotarget       Date:  2016-10-04

10.  Landscape of transcription in human cells.

Authors:  Sarah Djebali; Carrie A Davis; Angelika Merkel; Alex Dobin; Timo Lassmann; Ali Mortazavi; Andrea Tanzer; Julien Lagarde; Wei Lin; Felix Schlesinger; Chenghai Xue; Georgi K Marinov; Jainab Khatun; Brian A Williams; Chris Zaleski; Joel Rozowsky; Maik Röder; Felix Kokocinski; Rehab F Abdelhamid; Tyler Alioto; Igor Antoshechkin; Michael T Baer; Nadav S Bar; Philippe Batut; Kimberly Bell; Ian Bell; Sudipto Chakrabortty; Xian Chen; Jacqueline Chrast; Joao Curado; Thomas Derrien; Jorg Drenkow; Erica Dumais; Jacqueline Dumais; Radha Duttagupta; Emilie Falconnet; Meagan Fastuca; Kata Fejes-Toth; Pedro Ferreira; Sylvain Foissac; Melissa J Fullwood; Hui Gao; David Gonzalez; Assaf Gordon; Harsha Gunawardena; Cedric Howald; Sonali Jha; Rory Johnson; Philipp Kapranov; Brandon King; Colin Kingswood; Oscar J Luo; Eddie Park; Kimberly Persaud; Jonathan B Preall; Paolo Ribeca; Brian Risk; Daniel Robyr; Michael Sammeth; Lorian Schaffer; Lei-Hoon See; Atif Shahab; Jorgen Skancke; Ana Maria Suzuki; Hazuki Takahashi; Hagen Tilgner; Diane Trout; Nathalie Walters; Huaien Wang; John Wrobel; Yanbao Yu; Xiaoan Ruan; Yoshihide Hayashizaki; Jennifer Harrow; Mark Gerstein; Tim Hubbard; Alexandre Reymond; Stylianos E Antonarakis; Gregory Hannon; Morgan C Giddings; Yijun Ruan; Barbara Wold; Piero Carninci; Roderic Guigó; Thomas R Gingeras
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

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  5 in total

1.  The spleen as a sanctuary site for residual leukemic cells following ABT-199 monotherapy in ETP-ALL.

Authors:  Alessandra Di Grande; Sofie Peirs; Paul D Donovan; Maaike Van Trimpont; Julie Morscio; Beatrice Lintermans; Lindy Reunes; Niels Vandamme; Steven Goossens; Hien Anh Nguyen; Arnon Lavie; Richard B Lock; Jochen H M Prehn; Pieter Van Vlierberghe; Triona Ní Chonghaile
Journal:  Blood Adv       Date:  2021-04-13

Review 2.  Linear and Circular Long Non-Coding RNAs in Acute Lymphoblastic Leukemia: From Pathogenesis to Classification and Treatment.

Authors:  Yasen Maimaitiyiming; Linyan Ye; Tao Yang; Wenjuan Yu; Hua Naranmandura
Journal:  Int J Mol Sci       Date:  2022-04-18       Impact factor: 6.208

Review 3.  lncRNAs in T lymphocytes: RNA regulation at the heart of the immune response.

Authors:  Leah M Plasek; Saba Valadkhan
Journal:  Am J Physiol Cell Physiol       Date:  2020-12-09       Impact factor: 4.249

4.  TET2 as a tumor suppressor and therapeutic target in T-cell acute lymphoblastic leukemia.

Authors:  Maike Bensberg; Olof Rundquist; Aida Selimović; Cathrine Lagerwall; Mikael Benson; Mika Gustafsson; Hartmut Vogt; Antonio Lentini; Colm E Nestor
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-24       Impact factor: 11.205

5.  Aging of preleukemic thymocytes drives CpG island hypermethylation in T-cell acute lymphoblastic leukemia.

Authors:  Juliette Roels; Morgan Thénoz; Bronisława Szarzyńska; Mattias Landfors; Stien De Coninck; Lisa Demoen; Lien Provez; Anna Kuchmiy; Steven Strubbe; Lindy Reunes; Tim Pieters; Filip Matthijssens; Wouter Van Loocke; Büşra Erarslan-Uysal; Paulina Richter-Pechańska; Ken Declerck; Tim Lammens; Barbara De Moerloose; Dieter Deforce; Filip Van Nieuwerburgh; Laurence C Cheung; Rishi S Kotecha; Marc R Mansour; Bart Ghesquière; Guy Van Camp; Wim Vanden Berghe; Jerzy R Kowalczyk; Tomasz Szczepański; Utpal P Davé; Andreas E Kulozik; Steven Goossens; David J Curtis; Tom Taghon; Małgorzata Dawidowska; Sofie Degerman; Pieter Van Vlierberghe
Journal:  Blood Cancer Discov       Date:  2020-09-23
  5 in total

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