Literature DB >> 29951247

Crystal structure of 1-[3,5-bis-(tri-fluoro-meth-yl)phen-yl]-2-bromo-ethan-1-one.

Sandeep Chandrashekharappa1, Keshab M Bairagi2, Mahendra K Mohan1, Viresh Mohanlall3, Kabange Kasumbwe3, Katharigatta N Venugopala3, Susanta K Nayak2.   

Abstract

The title compound, C10H5BrF6O, synthesized via continuous stirring of 3,5-bis-(tri-fluoro-meth-yl) aceto-phenone with bromine in an acidic medium and concentrated under reduced pressure, crystallizes with four mol-ecules in the unit cell (Z = 4) and one formula unit in the asymmetric unit. In the crystal, mol-ecules are linked in a head-to-tail fashion into dimers along the b-axis direction through weak C-H⋯Br and C-O⋯Csp2 inter-actions. C-H⋯O, C-F⋯π and F⋯F inter-actions are also observed.

Entities:  

Keywords:  crystal structure; tri­fluoro­meth­yl)phenyl­bromo­ethanone; weak inter­actions

Year:  2018        PMID: 29951247      PMCID: PMC6002836          DOI: 10.1107/S2056989018007478

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Substituted phenacyl bromides can be achieved by α-bromination of substituted ketones employing suitable bromination reagents such as mol­ecular bromine (Curran & Chang, 1989 ▸), copper bromide (King & Ostrum, 1964 ▸), N-bromo­succinimide (Tanemura et al., 2004 ▸), 3-methyl­imidazolium tribromide (Chiappe et al., 2004 ▸) and hydrogen bromide (Podgoršek et al., 2009 ▸). In our previous communications, we tried to develop inter­mediates (Chopra et al., 2007 ▸) for the construction of biologically active heterocyclic compounds (Kasumbwe et al., 2017 ▸). In this context, the title compound serves as a synthetic precursor and finds application in the construction of pharmacologically active heterocyclic compounds (Venugopala et al., 2018 ▸, 2007 ▸).

Structural commentary

A displacement ellipsoid plot of the title compound with the atom labelling is shown in Fig. 1 ▸. The compound crystallizes in the monoclinic space group P21/c with one mol­ecule in the asymmetric unit and four mol­ecules in the unit cell (Z = 4). The torsion angle between the alkyl bromide unit and the phenyl ring (C3—C2—C1—Br1) is −179.6 (3)° whereas that between the alkyl bromide and carbonyl parts (O1—C2—C1—Br1) is 0.3 (5)°, which shows a preference for a syn orientation of the alkyl bromide unit with respect to the carbonyl group.
Figure 1

The asymmetric unit of the title compound, with 50% probability ellipsoids.

Supra­molecular features

In the crystal, the mol­ecules are arranged in a head-to-tail fashion, forming dimers sustained by C—Br⋯H and >C=O⋯π(>C=O) (O⋯π = 3.252 Å) inter­actions. The dimers are linked along the c-axis direction by C—H⋯O and C—F⋯π inter­actions (Table 1 ▸, Fig. 2 ▸). The assembly of dimers is further extended along the a-axis direction by F1⋯F4(x,  − y,  + z) [2.868 (4) Å] inter­actions, resulting in a bilayer which further packs in parallel fashion along the a-axis direction (Fig. 3 ▸).
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1A⋯O1i 0.992.573.501 (5)157
C1—Br1⋯H4ii 1.92 (1)2.94 (11)3.882169
C2—O1⋯C2iii 1.20 (1)3.05 (1)4.126149 (1)
C9—F2⋯πiv 1.32 (1)3.894.848130

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Figure 2

Dimer assembled through C—H⋯Br and >C=O⋯π(>C=O) inter­actions (left) and dimers extending along the b-axis direction via C—H⋯O and C—F⋯π inter­actions (Table 1 ▸).

Figure 3

F⋯F inter­actions resulting in a bilayer that packs in a parallel fashion along the a-axis direction.

Database survey

There are more than 1000 crystal structure of phenyl ethanone derivatives in the Cambridge Structural Database (CSD) (Conquest Version 1.17; Groom et al., 2016 ▸) but none of them gave a hit for 1-[3,5-bis­(tri­fluoro­meth­yl)phen­yl]-2-bromo­ethanone. However, the crystal structures of related derivatives have been reported. These include phenyl 2-bromo­ethanone (URELEJ; Betz et al., 2011 ▸) and a phenyl 2-bromo­ethanone complex (VIVFIP; Laube et al., 1991 ▸). The first compound, Z = 4, features two prominent hydrogen bonds involving the oxygen atom while in the second, also Z = 4, the oxygen atom forms a complex with anti­mony penta­chloride.

Synthesis and crystallization

A stirred solution of 3,5-bis­(tri­fluoro­meth­yl) aceto­phenone (0.5 g, 1.95 mmol) in acetic acid (5 mL) was added dropwise to bromine (0.312 g, 1.95 mmol) in acetic acid. The reaction medium was stirred at room temperature for 5 h. To the resulting mixture, water (5 mL) was added and the mixture was concentrated under reduced pressure. The residue obtained was diluted with ethyl­acetate (10 mL), the organic layer washed with water (10 mL) and a sodium bicarbonate solution (5 mL), and filtered through dried sodium sulfate and evaporated to obtain 1-(3,5-bis­(tri­fluoro­meth­yl)phen­yl)-2-bromo­ethanone as a light-yellow solid in 62% yield. m.p: 317–318 K. 1H NMR: (CDCl3, 600 MHz): 8.44 (2H, s), 8.13 (1H, s), 4.48 (2H, s); 13C NMR: (CDCl3, 150 MHz): 188.81, 135.31, 133.06, 132.83, 132.60, 128.99, 127.08, 127.06, 125.42, 123.61, 121.80, 120.00, 29.46.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. Hydrogen atoms were placed in idealized positions (C—H = 0.95–0.99 Å) and refined using a riding model with U iso(H) = 1.2–1.5U eq(C).
Table 2

Experimental details

Crystal data
Chemical formulaC10H5BrF6O
M r 335.04
Crystal system, space groupMonoclinic, P21/c
Temperature (K)153
a, b, c (Å)14.156 (5), 5.0111 (16), 15.535 (5)
β (°)104.316 (5)
V3)1067.7 (6)
Z 4
Radiation typeMo Kα
μ (mm−1)3.92
Crystal size (mm)0.23 × 0.09 × 0.06
 
Data collection
DiffractometerBruker Kappa APEXII DUO
Absorption correctionMulti-scan (SADABS; Bruker, 2012)
T min, T max 0.442, 0.759
No. of measured, independent and observed [I > 2σ(I)] reflections11628, 2405, 1741
R int 0.060
(sin θ/λ)max−1)0.646
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.041, 0.103, 1.03
No. of reflections2405
No. of parameters163
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.78, −1.12

Computer programs: APEX2 and SAINT (Bruker, 2012 ▸), SHELXS (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), Mercury (Macrae et al., 2008 ▸), PLATON (Spek, 2009 ▸) and PARST (Nardelli, 1995 ▸).

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989018007478/ds2250sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989018007478/ds2250Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989018007478/ds2250Isup3.cml CCDC reference: 1843826 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H5BrF6OF(000) = 648
Mr = 335.04Dx = 2.084 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2405 reflections
a = 14.156 (5) Åθ = 2.7–27.4°
b = 5.0111 (16) ŵ = 3.92 mm1
c = 15.535 (5) ÅT = 153 K
β = 104.316 (5)°Needle, colorless
V = 1067.7 (6) Å30.23 × 0.09 × 0.06 mm
Z = 4
Bruker Kappa APEXII DUO diffractometer2405 independent reflections
Radiation source: fine-focus sealed tube1741 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.060
ω scansθmax = 27.4°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2012)h = −18→18
Tmin = 0.442, Tmax = 0.759k = −6→6
11628 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0541P)2 + 0.3605P] where P = (Fo2 + 2Fc2)/3
2405 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.78 e Å3
0 restraintsΔρmin = −1.12 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
Br10.60416 (2)0.14882 (9)0.09433 (3)0.03259 (16)
F10.21893 (17)0.1990 (6)0.38145 (15)0.0468 (7)
F20.1420 (2)−0.0983 (6)0.29661 (17)0.0597 (8)
F30.07527 (19)0.2781 (7)0.3050 (2)0.0655 (9)
F40.19332 (17)0.8957 (5)0.00403 (18)0.0480 (7)
F50.07651 (19)0.8912 (5)0.06942 (16)0.0484 (7)
F60.07736 (15)0.6137 (5)−0.03417 (14)0.0362 (6)
O10.45527 (18)−0.0571 (6)0.18612 (18)0.0329 (6)
C10.4825 (2)0.3126 (8)0.0979 (3)0.0278 (9)
H1A0.49550.49210.12490.033*
H1B0.44230.33520.03650.033*
C20.4258 (3)0.1506 (8)0.1506 (2)0.0258 (8)
C30.3301 (2)0.2646 (8)0.1557 (2)0.0237 (8)
C40.2889 (3)0.1673 (8)0.2217 (2)0.0264 (8)
H40.32180.03530.26200.032*
C50.1991 (2)0.2642 (8)0.2285 (2)0.0255 (8)
C60.1483 (2)0.4474 (8)0.1686 (2)0.0259 (8)
H60.08570.50700.17220.031*
C70.1901 (2)0.5434 (8)0.1028 (2)0.0239 (8)
C80.2806 (3)0.4557 (8)0.0968 (2)0.0255 (8)
H80.30910.52610.05240.031*
C90.1583 (3)0.1609 (9)0.3022 (3)0.0313 (9)
C100.1348 (3)0.7374 (9)0.0362 (3)0.0308 (9)
U11U22U33U12U13U23
Br10.0200 (2)0.0386 (3)0.0398 (3)0.00282 (17)0.00868 (15)−0.0043 (2)
F10.0405 (14)0.072 (2)0.0306 (13)−0.0144 (13)0.0130 (11)−0.0053 (12)
F20.093 (2)0.044 (2)0.0531 (17)−0.0302 (15)0.0394 (16)−0.0108 (13)
F30.0370 (14)0.094 (2)0.077 (2)0.0245 (15)0.0356 (14)0.0359 (17)
F40.0332 (13)0.0366 (17)0.0686 (18)−0.0044 (11)0.0020 (12)0.0237 (13)
F50.0500 (14)0.0464 (18)0.0440 (14)0.0282 (13)0.0024 (11)−0.0025 (12)
F60.0292 (11)0.0432 (17)0.0324 (12)−0.0001 (10)0.0005 (9)−0.0029 (10)
O10.0285 (14)0.0294 (18)0.0420 (16)0.0055 (12)0.0109 (12)0.0065 (13)
C10.0188 (16)0.029 (3)0.036 (2)0.0010 (15)0.0074 (15)−0.0008 (17)
C20.0235 (17)0.023 (2)0.030 (2)−0.0036 (16)0.0046 (14)−0.0040 (17)
C30.0203 (17)0.023 (2)0.028 (2)−0.0016 (15)0.0056 (15)−0.0021 (16)
C40.0237 (17)0.022 (2)0.032 (2)−0.0005 (15)0.0052 (15)−0.0020 (16)
C50.0230 (18)0.025 (2)0.028 (2)−0.0036 (15)0.0061 (15)−0.0023 (16)
C60.0189 (16)0.025 (2)0.034 (2)0.0007 (15)0.0056 (15)−0.0002 (17)
C70.0190 (16)0.021 (2)0.029 (2)0.0009 (14)0.0017 (14)−0.0010 (16)
C80.0274 (18)0.021 (2)0.028 (2)−0.0007 (15)0.0071 (15)−0.0012 (16)
C90.0253 (18)0.032 (3)0.037 (2)−0.0022 (17)0.0085 (16)−0.0016 (18)
C100.0263 (19)0.029 (2)0.034 (2)0.0032 (17)0.0013 (16)−0.0008 (18)
Br1—C11.921 (4)C3—C41.388 (5)
F1—C91.329 (4)C3—C81.389 (5)
F2—C91.319 (5)C4—C51.388 (5)
F3—C91.325 (4)C4—H40.9500
F4—C101.330 (5)C5—C61.377 (5)
F5—C101.324 (5)C5—C91.497 (5)
F6—C101.343 (4)C6—C71.388 (5)
O1—C21.203 (5)C6—H60.9500
C1—C21.516 (5)C7—C81.378 (5)
C1—H1A0.9900C7—C101.492 (5)
C1—H1B0.9900C8—H80.9500
C2—C31.490 (5)
C2—C1—Br1112.7 (3)C7—C6—H6120.6
C2—C1—H1A109.1C8—C7—C6120.8 (3)
Br1—C1—H1A109.1C8—C7—C10119.9 (3)
C2—C1—H1B109.1C6—C7—C10119.3 (3)
Br1—C1—H1B109.1C7—C8—C3120.1 (3)
H1A—C1—H1B107.8C7—C8—H8119.9
O1—C2—C3121.6 (3)C3—C8—H8119.9
O1—C2—C1122.7 (3)F2—C9—F3107.2 (3)
C3—C2—C1115.7 (3)F2—C9—F1105.4 (3)
C4—C3—C8119.5 (3)F3—C9—F1106.3 (3)
C4—C3—C2117.3 (3)F2—C9—C5112.7 (3)
C8—C3—C2123.1 (3)F3—C9—C5112.7 (3)
C5—C4—C3119.5 (4)F1—C9—C5112.1 (3)
C5—C4—H4120.2F5—C10—F4107.8 (4)
C3—C4—H4120.2F5—C10—F6106.0 (3)
C6—C5—C4121.2 (3)F4—C10—F6106.1 (3)
C6—C5—C9120.8 (3)F5—C10—C7112.4 (3)
C4—C5—C9118.0 (4)F4—C10—C7112.4 (3)
C5—C6—C7118.8 (3)F6—C10—C7111.8 (3)
C5—C6—H6120.6
Br1—C1—C2—O10.3 (5)C10—C7—C8—C3−176.6 (4)
Br1—C1—C2—C3−179.6 (3)C4—C3—C8—C7−1.4 (6)
O1—C2—C3—C417.6 (5)C2—C3—C8—C7176.9 (3)
C1—C2—C3—C4−162.5 (3)C6—C5—C9—F2117.1 (4)
O1—C2—C3—C8−160.8 (4)C4—C5—C9—F2−62.1 (5)
C1—C2—C3—C819.1 (5)C6—C5—C9—F3−4.4 (6)
C8—C3—C4—C5−0.6 (6)C4—C5—C9—F3176.5 (4)
C2—C3—C4—C5−179.0 (3)C6—C5—C9—F1−124.2 (4)
C3—C4—C5—C62.7 (6)C4—C5—C9—F156.6 (5)
C3—C4—C5—C9−178.1 (3)C8—C7—C10—F5−151.0 (4)
C4—C5—C6—C7−2.7 (6)C6—C7—C10—F530.9 (5)
C9—C5—C6—C7178.2 (3)C8—C7—C10—F4−29.3 (5)
C5—C6—C7—C80.5 (6)C6—C7—C10—F4152.6 (4)
C5—C6—C7—C10178.7 (4)C8—C7—C10—F689.9 (4)
C6—C7—C8—C31.5 (6)C6—C7—C10—F6−88.2 (4)
D—H···AD—HH···AD···AD—H···A
C1—H1A···O1i0.992.573.501 (5)157
C1—Br1···H4ii1.92 (1)2.94 (11)3.882169
C2—O1···C2iii1.20 (1)3.05 (1)4.126149 (1)
C9—F2···πiv1.32 (1)3.894.848130
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Journal:  Chem Commun (Camb)       Date:  2004-01-28       Impact factor: 6.222

5.  Synthesis and reactivity of fluorous and nonfluorous aryl and alkyl iodine(III) dichlorides: new chlorinating reagents that are easily recycled using biphasic protocols.

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6.  Highly efficient bromination of aromatic compounds using 3-methylimidazolium tribromide as reagent/solvent.

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7.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

9.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
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  9 in total

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