| Literature DB >> 29951238 |
Alexander T Chemey1, Chad M McGuire1, Thomas E Albrecht-Schmitt1.
Abstract
The title compound {systematic name: 3-carb-oxy-2-[2-(3-carb-oxy-pyridin-2-yl)disulfan-1-yl)]pyridin-1-ium chloride monohydrate}, C12H9N2O4S2+·Cl-·H2O, crystallizes in the triclinic space group P . A pair of 2-mercaptonicotinic acid moieties is connected by a 2,2'-di-sulfide bond with a dihedral angle of 78.79 (3)°. One of the N atom is protonated, as are both carboxyl-ate groups, resulting in an overall +1 charge on the dimer. The structure comprises a zigzagging layer of the dimerized di-thio-dinicotinic acid rings, with charge-balancing chloride ions and water mol-ecules between the layers. Hydrogen bonding between the chloride and water sites with the dimer appears to hold the structure together. Nearest neighbor nicotinic acid rings are offset when viewed down the a axis, suggesting no added stability from ring stacking. The asymmetric unit corresponds to the empirical formula of the compound, and it packs with two formula units per unit cell.Entities:
Keywords: crystal structure; disulfide bonds; hydrate; mercaptonicotinic acid; nicotinic acid; pyridinium
Year: 2018 PMID: 29951238 PMCID: PMC6002824 DOI: 10.1107/S2056989018006916
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Displacement ellipsoid plot (50% probability level) of H(2-mnaH)2Cl·H2O.
Figure 2The packing of H(2-mnaH)2Cl·H2O, as viewed down the a axis. Note the zigzag shape of the layers, and the offset configuration of the nicotinic acid rings. Color code: yellow, sulfur; brown, carbon; pale blue, nitrogen; green, chlorine; pale pink, hydrogen.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.84 (2) | 2.41 (2) | 3.1228 (15) | 143 (2) |
| C10—H10⋯O1ii | 0.91 (2) | 2.53 (2) | 3.405 (2) | 162.0 (18) |
| C11—H11⋯Cl1iii | 0.94 (2) | 2.74 (2) | 3.4776 (18) | 135.7 (15) |
| C4—H4 | 0.90 (2) | 2.63 (2) | 3.259 (2) | 128.5 (17) |
| C4—H4 | 0.90 (2) | 2.89 (2) | 3.6340 (19) | 141.1 (17) |
| O4—H4⋯O5v | 1.01 (3) | 1.52 (3) | 2.5164 (19) | 169 (3) |
| O2—H3⋯Cl1vi | 0.91 (3) | 2.12 (3) | 3.0197 (15) | 170 (3) |
| O5—H1⋯O3vii | 0.85 (3) | 2.10 (3) | 2.8709 (19) | 151 (3) |
| O5—H2⋯Cl1viii | 0.88 (3) | 2.20 (3) | 3.0848 (16) | 177 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .
Figure 3The view down [111], illustrating the inter-layer chloride and water sites which stitch the cationic dimers together.
Experimental details
| Crystal data | |
| Chemical formula | C12H9N2O4S2 +·Cl−·H2O |
|
| 362.80 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 120 |
|
| 7.9906 (12), 9.7081 (14), 10.2704 (15) |
| α, β, γ (°) | 86.727 (3), 73.088 (3), 73.538 (3) |
|
| 730.73 (19) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.57 |
| Crystal size (mm) | 0.05 × 0.05 × 0.03 |
| Data collection | |
| Diffractometer | Bruker D8 Quest |
| Absorption correction | Multi-scan ( |
|
| 0.688, 0.747 |
| No. of measured, independent and observed [ | 11750, 3483, 2974 |
|
| 0.031 |
| (sin θ/λ)max (Å−1) | 0.658 |
| Refinement | |
|
| 0.032, 0.075, 1.06 |
| No. of reflections | 3483 |
| No. of parameters | 243 |
| H-atom treatment | All H-atom parameters refined |
| Δρmax, Δρmin (e Å−3) | 0.34, −0.29 |
Computer programs: APEX3 and SAINT (Bruker, 2015 ▸), SHELXS2014 (Sheldrick, 2008 ▸), SHELXL2014 and SHELXP2014 (Sheldrick, 2015 ▸), VESTA (Momma & Izumi, 2011 ▸) and publCIF (Westrip, 2010 ▸).
| C12H9N2O4S2+·Cl−·H2O | |
| Triclinic, | |
| Mo | |
| Cell parameters from 2974 reflections | |
| θ = 2.8–27.9° | |
| α = 86.727 (3)° | µ = 0.57 mm−1 |
| β = 73.088 (3)° | |
| γ = 73.538 (3)° | Truncated column, yellow |
| 0.05 × 0.05 × 0.03 mm |
| Bruker D8 Quest diffractometer | 2974 reflections with |
| Radiation source: Iµs microfocused | |
| 0.5° wide /w exposures scans | θmax = 27.9°, θmin = 2.8° |
| Absorption correction: multi-scan (SADABS; Bruker, 2015) | |
| 11750 measured reflections | |
| 3483 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| All H-atom parameters refined | |
| (Δ/σ)max = 0.001 | |
| 3483 reflections | Δρmax = 0.34 e Å−3 |
| 243 parameters | Δρmin = −0.28 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| S1 | 0.55285 (6) | 0.73261 (4) | −0.03978 (4) | 0.01593 (10) | |
| S2 | 0.34334 (6) | 0.84956 (5) | 0.11499 (4) | 0.01655 (10) | |
| O4 | 1.03798 (18) | 0.38461 (14) | −0.23492 (13) | 0.0231 (3) | |
| N1 | 0.6456 (2) | 0.88005 (16) | 0.15917 (15) | 0.0183 (3) | |
| O3 | 0.81335 (18) | 0.58125 (14) | −0.24563 (12) | 0.0241 (3) | |
| O2 | 0.09614 (18) | 1.16658 (15) | 0.45610 (14) | 0.0249 (3) | |
| C12 | 0.8861 (2) | 0.48353 (18) | −0.18308 (17) | 0.0160 (3) | |
| N2 | 0.5831 (2) | 0.55966 (15) | 0.17321 (14) | 0.0137 (3) | |
| H2A | 0.495 (3) | 0.625 (3) | 0.219 (2) | 0.033 (6)* | |
| O1 | 0.07437 (17) | 1.04648 (14) | 0.28410 (14) | 0.0243 (3) | |
| C9 | 0.8823 (2) | 0.35342 (18) | 0.03531 (18) | 0.0164 (3) | |
| H9A | 0.987 (3) | 0.286 (2) | −0.013 (2) | 0.015 (5)* | |
| C10 | 0.8052 (2) | 0.33966 (19) | 0.17376 (18) | 0.0181 (4) | |
| H10 | 0.854 (3) | 0.263 (2) | 0.220 (2) | 0.022 (5)* | |
| C11 | 0.6531 (2) | 0.44517 (19) | 0.24083 (18) | 0.0169 (3) | |
| H11 | 0.596 (3) | 0.443 (2) | 0.334 (2) | 0.016 (5)* | |
| C5 | 0.7374 (2) | 0.93776 (19) | 0.22147 (19) | 0.0196 (4) | |
| H5A | 0.869 (3) | 0.901 (2) | 0.192 (2) | 0.021 (5)* | |
| C7 | 0.6516 (2) | 0.57744 (17) | 0.03867 (16) | 0.0129 (3) | |
| C1 | 0.4649 (2) | 0.92968 (17) | 0.19882 (17) | 0.0148 (3) | |
| C4 | 0.6562 (2) | 1.04237 (18) | 0.32312 (18) | 0.0174 (3) | |
| H4A | 0.723 (3) | 1.075 (2) | 0.364 (2) | 0.025 (6)* | |
| C3 | 0.4674 (2) | 1.09120 (18) | 0.36465 (17) | 0.0160 (3) | |
| H3A | 0.408 (3) | 1.162 (2) | 0.430 (2) | 0.014 (5)* | |
| C2 | 0.3676 (2) | 1.03471 (17) | 0.30221 (17) | 0.0148 (3) | |
| C8 | 0.8054 (2) | 0.46990 (17) | −0.03376 (16) | 0.0139 (3) | |
| C6 | 0.1649 (2) | 1.08231 (18) | 0.34541 (18) | 0.0168 (3) | |
| H4 | 1.093 (4) | 0.396 (3) | −0.336 (3) | 0.058 (8)* | |
| H3 | −0.028 (4) | 1.198 (3) | 0.478 (3) | 0.059 (9)* | |
| O5 | 1.20128 (19) | 1.41990 (16) | 0.52156 (14) | 0.0237 (3) | |
| H1 | 1.173 (4) | 1.400 (3) | 0.453 (3) | 0.064 (9)* | |
| H2 | 1.232 (4) | 1.501 (3) | 0.504 (3) | 0.062 (9)* | |
| Cl1 | 0.68897 (6) | 1.29911 (4) | 0.55204 (4) | 0.01899 (11) |
| S1 | 0.0192 (2) | 0.0151 (2) | 0.01288 (19) | −0.00254 (16) | −0.00613 (16) | 0.00176 (15) |
| S2 | 0.0152 (2) | 0.0167 (2) | 0.0180 (2) | −0.00215 (16) | −0.00707 (16) | −0.00083 (16) |
| O4 | 0.0219 (7) | 0.0223 (7) | 0.0173 (6) | −0.0006 (5) | 0.0010 (5) | −0.0002 (5) |
| N1 | 0.0158 (7) | 0.0178 (7) | 0.0211 (7) | −0.0038 (6) | −0.0052 (6) | −0.0020 (6) |
| O3 | 0.0269 (7) | 0.0260 (7) | 0.0130 (6) | 0.0015 (6) | −0.0047 (5) | 0.0003 (5) |
| O2 | 0.0154 (6) | 0.0293 (7) | 0.0256 (7) | −0.0027 (6) | −0.0009 (5) | −0.0087 (6) |
| C12 | 0.0173 (8) | 0.0159 (8) | 0.0151 (8) | −0.0060 (7) | −0.0031 (6) | −0.0028 (6) |
| N2 | 0.0143 (7) | 0.0137 (7) | 0.0127 (7) | −0.0034 (6) | −0.0036 (5) | −0.0006 (5) |
| O1 | 0.0157 (6) | 0.0252 (7) | 0.0315 (7) | −0.0023 (5) | −0.0078 (5) | −0.0064 (6) |
| C9 | 0.0159 (8) | 0.0142 (8) | 0.0195 (8) | −0.0039 (7) | −0.0054 (7) | −0.0012 (7) |
| C10 | 0.0217 (9) | 0.0166 (8) | 0.0192 (8) | −0.0072 (7) | −0.0098 (7) | 0.0054 (7) |
| C11 | 0.0192 (9) | 0.0192 (9) | 0.0143 (8) | −0.0078 (7) | −0.0059 (7) | 0.0037 (7) |
| C5 | 0.0146 (9) | 0.0184 (9) | 0.0257 (9) | −0.0045 (7) | −0.0055 (7) | 0.0001 (7) |
| C7 | 0.0156 (8) | 0.0134 (8) | 0.0124 (7) | −0.0069 (6) | −0.0055 (6) | 0.0008 (6) |
| C1 | 0.0163 (8) | 0.0121 (8) | 0.0167 (8) | −0.0049 (6) | −0.0054 (6) | 0.0025 (6) |
| C4 | 0.0184 (9) | 0.0156 (8) | 0.0204 (9) | −0.0073 (7) | −0.0068 (7) | 0.0019 (7) |
| C3 | 0.0187 (8) | 0.0129 (8) | 0.0153 (8) | −0.0033 (7) | −0.0044 (7) | 0.0013 (6) |
| C2 | 0.0146 (8) | 0.0129 (8) | 0.0159 (8) | −0.0028 (6) | −0.0042 (6) | 0.0035 (6) |
| C8 | 0.0144 (8) | 0.0155 (8) | 0.0137 (8) | −0.0066 (6) | −0.0042 (6) | −0.0008 (6) |
| C6 | 0.0148 (8) | 0.0122 (8) | 0.0214 (9) | −0.0027 (6) | −0.0036 (7) | 0.0019 (6) |
| O5 | 0.0272 (7) | 0.0252 (7) | 0.0181 (7) | −0.0094 (6) | −0.0031 (5) | −0.0020 (6) |
| Cl1 | 0.0198 (2) | 0.0182 (2) | 0.0150 (2) | −0.00300 (16) | −0.00111 (16) | 0.00010 (15) |
| S1—C7 | 1.7602 (17) | C9—C10 | 1.391 (2) |
| S1—S2 | 2.0491 (6) | C9—H9A | 0.93 (2) |
| S2—C1 | 1.8113 (17) | C10—C11 | 1.374 (3) |
| O4—C12 | 1.304 (2) | C10—H10 | 0.91 (2) |
| O4—H4 | 1.01 (3) | C11—H11 | 0.94 (2) |
| N1—C1 | 1.330 (2) | C5—C4 | 1.377 (3) |
| N1—C5 | 1.345 (2) | C5—H5A | 0.97 (2) |
| O3—C12 | 1.219 (2) | C7—C8 | 1.408 (2) |
| O2—C6 | 1.324 (2) | C1—C2 | 1.402 (2) |
| O2—H3 | 0.91 (3) | C4—C3 | 1.388 (2) |
| C12—C8 | 1.495 (2) | C4—H4A | 0.90 (2) |
| N2—C11 | 1.348 (2) | C3—C2 | 1.390 (2) |
| N2—C7 | 1.351 (2) | C3—H3A | 0.912 (19) |
| N2—H2A | 0.84 (2) | C2—C6 | 1.489 (2) |
| O1—C6 | 1.214 (2) | O5—H1 | 0.85 (3) |
| C9—C8 | 1.388 (2) | O5—H2 | 0.88 (3) |
| C7—S1—S2 | 104.35 (6) | N2—C7—C8 | 117.59 (15) |
| C1—S2—S1 | 101.27 (6) | N2—C7—S1 | 120.27 (12) |
| C12—O4—H4 | 113.0 (16) | C8—C7—S1 | 122.13 (12) |
| C1—N1—C5 | 116.90 (15) | N1—C1—C2 | 123.81 (15) |
| C6—O2—H3 | 111.6 (18) | N1—C1—S2 | 116.31 (13) |
| O3—C12—O4 | 125.39 (16) | C2—C1—S2 | 119.85 (13) |
| O3—C12—C8 | 120.99 (15) | C5—C4—C3 | 118.05 (17) |
| O4—C12—C8 | 113.61 (15) | C5—C4—H4A | 121.2 (14) |
| C11—N2—C7 | 123.70 (15) | C3—C4—H4A | 120.7 (14) |
| C11—N2—H2A | 117.0 (16) | C4—C3—C2 | 119.45 (16) |
| C7—N2—H2A | 119.2 (16) | C4—C3—H3A | 121.1 (12) |
| C8—C9—C10 | 120.68 (16) | C2—C3—H3A | 119.4 (12) |
| C8—C9—H9A | 118.4 (12) | C3—C2—C1 | 117.55 (15) |
| C10—C9—H9A | 120.9 (12) | C3—C2—C6 | 121.11 (15) |
| C11—C10—C9 | 118.45 (16) | C1—C2—C6 | 121.33 (15) |
| C11—C10—H10 | 120.2 (13) | C9—C8—C7 | 119.36 (15) |
| C9—C10—H10 | 121.4 (13) | C9—C8—C12 | 120.77 (15) |
| N2—C11—C10 | 120.19 (16) | C7—C8—C12 | 119.86 (15) |
| N2—C11—H11 | 117.2 (12) | O1—C6—O2 | 124.40 (16) |
| C10—C11—H11 | 122.6 (12) | O1—C6—C2 | 122.64 (16) |
| N1—C5—C4 | 124.23 (16) | O2—C6—C2 | 112.96 (15) |
| N1—C5—H5A | 116.2 (12) | H1—O5—H2 | 107 (3) |
| C4—C5—H5A | 119.6 (12) |
| H··· | ||||
| N2—H2 | 0.84 (2) | 2.41 (2) | 3.1228 (15) | 143 (2) |
| C10—H10···O1ii | 0.91 (2) | 2.53 (2) | 3.405 (2) | 162.0 (18) |
| C11—H11···Cl1iii | 0.94 (2) | 2.74 (2) | 3.4776 (18) | 135.7 (15) |
| C4—H4 | 0.90 (2) | 2.63 (2) | 3.259 (2) | 128.5 (17) |
| C4—H4 | 0.90 (2) | 2.89 (2) | 3.6340 (19) | 141.1 (17) |
| O4—H4···O5v | 1.01 (3) | 1.52 (3) | 2.5164 (19) | 169 (3) |
| O2—H3···Cl1vi | 0.91 (3) | 2.12 (3) | 3.0197 (15) | 170 (3) |
| O5—H1···O3vii | 0.85 (3) | 2.10 (3) | 2.8709 (19) | 151 (3) |
| O5—H2···Cl1viii | 0.88 (3) | 2.20 (3) | 3.0848 (16) | 177 (3) |