Literature DB >> 29947591

Detecting multivariate cross-correlation between brain regions.

Jordan Rodu1, Natalie Klein2,3, Scott L Brincat4,5, Earl K Miller4,5, Robert E Kass2,3,6.   

Abstract

The problem of identifying functional connectivity from multiple time series data recorded in each of two or more brain areas arises in many neuroscientific investigations. For a single stationary time series in each of two brain areas statistical tools such as cross-correlation and Granger causality may be applied. On the other hand, to examine multivariate interactions at a single time point, canonical correlation, which finds the linear combinations of signals that maximize the correlation, may be used. We report here a new method that produces interpretations much like these standard techniques and, in addition, 1) extends the idea of canonical correlation to 3-way arrays (with dimensionality number of signals by number of time points by number of trials), 2) allows for nonstationarity, 3) also allows for nonlinearity, 4) scales well as the number of signals increases, and 5) captures predictive relationships, as is done with Granger causality. We demonstrate the effectiveness of the method through simulation studies and illustrate by analyzing local field potentials recorded from a behaving primate. NEW & NOTEWORTHY Multiple signals recorded from each of multiple brain regions may contain information about cross-region interactions. This article provides a method for visualizing the complicated interdependencies contained in these signals and assessing them statistically. The method combines signals optimally but allows the resulting measure of dependence to change, both within and between regions, as the responses evolve dynamically across time. We demonstrate the effectiveness of the method through numerical simulations and by uncovering a novel connectivity pattern between hippocampus and prefrontal cortex during a declarative memory task.

Entities:  

Keywords:  LFP; canonical correlation analysis; cross correlation; functional connectivity; kernel canonical correlation analysis

Mesh:

Year:  2018        PMID: 29947591      PMCID: PMC6230799          DOI: 10.1152/jn.00869.2017

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  10 in total

1.  Beta oscillations in a large-scale sensorimotor cortical network: directional influences revealed by Granger causality.

Authors:  Andrea Brovelli; Mingzhou Ding; Anders Ledberg; Yonghong Chen; Richard Nakamura; Steven L Bressler
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

2.  Canonical correlation analysis: an overview with application to learning methods.

Authors:  David R Hardoon; Sandor Szedmak; John Shawe-Taylor
Journal:  Neural Comput       Date:  2004-12       Impact factor: 2.026

3.  Estimating Granger causality after stimulus onset: a cautionary note.

Authors:  Xue Wang; Yonghong Chen; Mingzhou Ding
Journal:  Neuroimage       Date:  2008-03-26       Impact factor: 6.556

4.  Behaviour of Granger causality under filtering: theoretical invariance and practical application.

Authors:  Lionel Barnett; Anil K Seth
Journal:  J Neurosci Methods       Date:  2011-08-12       Impact factor: 2.390

5.  Prefrontal Cortex Networks Shift from External to Internal Modes during Learning.

Authors:  Scott L Brincat; Earl K Miller
Journal:  J Neurosci       Date:  2016-09-14       Impact factor: 6.167

6.  Frequency-specific hippocampal-prefrontal interactions during associative learning.

Authors:  Scott L Brincat; Earl K Miller
Journal:  Nat Neurosci       Date:  2015-02-23       Impact factor: 24.884

7.  Characterizing global statistical significance of spatiotemporal hot spots in magnetoencephalography/ electroencephalography source space via excursion algorithms.

Authors:  Yang Xu; Gustavo P Sudre; Wei Wang; Douglas J Weber; Robert E Kass
Journal:  Stat Med       Date:  2011-07-22       Impact factor: 2.373

Review 8.  A Tutorial Review of Functional Connectivity Analysis Methods and Their Interpretational Pitfalls.

Authors:  André M Bastos; Jan-Mathijs Schoffelen
Journal:  Front Syst Neurosci       Date:  2016-01-08

9.  Bidirectional prefrontal-hippocampal interactions support context-guided memory.

Authors:  Ryan Place; Anja Farovik; Marco Brockmann; Howard Eichenbaum
Journal:  Nat Neurosci       Date:  2016-06-20       Impact factor: 24.884

10.  Assessing Granger Causality in Electrophysiological Data: Removing the Adverse Effects of Common Signals via Bipolar Derivations.

Authors:  Amy Trongnetrpunya; Bijurika Nandi; Daesung Kang; Bernat Kocsis; Charles E Schroeder; Mingzhou Ding
Journal:  Front Syst Neurosci       Date:  2016-01-20
  10 in total
  2 in total

1.  A technical review of canonical correlation analysis for neuroscience applications.

Authors:  Xiaowei Zhuang; Zhengshi Yang; Dietmar Cordes
Journal:  Hum Brain Mapp       Date:  2020-06-27       Impact factor: 5.038

Review 2.  Statistical methods for dissecting interactions between brain areas.

Authors:  João D Semedo; Evren Gokcen; Christian K Machens; Adam Kohn; Byron M Yu
Journal:  Curr Opin Neurobiol       Date:  2020-11-01       Impact factor: 6.627

  2 in total

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