| Literature DB >> 29946101 |
Qian Li1, Huan Tao1, Jing Wang2, Qin Zhou3, Jie Chen4, Wen Zhe Qin5, Li Dong6, Bo Fu7, Jiang Long Hou6, Jin Chen8, Wei-Hong Zhang9,10,11.
Abstract
Warfarin is the most recommended anticoagulant drug for patients undergoing heart valve replacement. However, due to the narrow therapeutic window and individual dose, the use of warfarin needs more advanced technology. We used the data collected from a multi-central registered clinical system all over China about the patients who have undergone heart valve replacement, subsequently divided into three groups (training group: 10673 cases; internal validation group: 3558 cases; external validation group: 1463 cases) in order to construct a hybrid model with genetic algorithm and Back-Propagation neural network (BP-GA), For testing the model's prediction accuracy, we used Mean absolute error (MAE), Root mean squared error (RMSE) and the ideal predicted percentage of total and dose subgroups. In results, whether in internal or in external validation group, the total ideal predicted percentage was over 58% while the intermediate dose subgroup manifested the best. Moreover, it showed higher prediction accuracy, lower MAE value and lower RMSE value in the external validation group than that in the internal validation group (p < 0.05). In conclusion, BP-GA model is promising to predict warfarin maintenance dose.Entities:
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Year: 2018 PMID: 29946101 PMCID: PMC6018790 DOI: 10.1038/s41598-018-27772-9
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1The flow chart of BP-GA model construction.
Figure 2The flow diagram of data sets.
The basic characteristic of the whole study.
| Characteristic (unit) | Total cases | Training group | internal validation | external validation |
|---|---|---|---|---|
| (n = 15694) | (n = 10673) | (n = 3558) | (n = 1463) | |
| N (%)/(X ± S) | N (%)/(X ± S) | N (%)/(X ± S) | N (%)/(X ± S) | |
| Age (year) | 50.24 ± 11.17 | 50.43 ± 11.12 | 50.07 ± 11.19 | 49.35 ± 11.48* |
| Height (cm) | 162.90 ± 8.18 | 162.87 ± 8.19 | 163.12 ± 8.22 | 162.52 ± 7.96 |
| Weight (kg) | 60.77 ± 10.99 | 60.89 ± 11.06 | 60.79 ± 10.83 | 59.85 ± 10.77* |
| BSA (m2) | 1.62 ± 0.18 | 1.62 ± 0.18 | 1.62 ± 0.17 | 1.60 ± 0.17* |
| Gender (Male) | 7142 (45.5) | 4853 (45.5) | 1652 (46.4) | 637 (43.5) |
| Nationality (han) | 15003 (95.6) | 10209 (95.7) | 3407 (95.8) | 1378 (94.8) |
| Hypertension history | 1748 (11.1) | 1210 (11.3) | 399 (11.2) | 139 (9.5) |
| Operation history | 1702 (10.8) | 1164 (10.9) | 389 (10.9) | 149 (10.2) |
| EF (%) | 58.36 ± 8.79 | 58.26 ± 8.80 | 58.52 ± 8.61 | 58.71 ± 9.13 |
| Left ventricular diastolic diameter (mm) | 57.38 ± 14.44 | 57.65 ± 14.63 | 57.43 ± 14.18 | 55.27 ± 13.48* |
| Inner diameter of left atrium (mm) | 50.15 ± 14.06 | 50.20 ± 13.74 | 49.67 ± 14.09 | 50.98 ± 16.11 |
| Inner diameter of right atrium (mm) | 38.84 ± 14.01 | 38.69 ± 13.81 | 38.33 ± 13.65 | 41.20 ± 16.00* |
| ALT (IU/L) | 26 ± 20.29 | 26.03 ± 20.36 | 26.27 ± 20.42 | 25.16 ± 19.35 |
| AST (IU/L) | 26.50 ± 16.38 | 26.46 ± 16.26 | 26.43 ± 17.01 | 26.94 ± 15.66 |
| Total albumen (g/L) | 68.51 ± 6.77 | 68.48 ± 6.71 | 68.43 ± 6.80 | 68.88 ± 7.07* |
| Albumin (g/L) | 41.60 ± 4.70 | 41.62 ± 4.66 | 41.66 ± 4.64 | 41.24 ± 5.07* |
| ALB/GLB | 1.62 ± 0.45 | 1.62 ± 0.46 | 1.63 ± 0.43 | 1.57 ± 0.47 |
| Urea nitrogen (mmol/L) | 6.13 ± 2.08 | 6.13 ± 2.07 | 6.13 ± 2.11 | 6.16 ± 2.08 |
| Creatnine (umol/L) | 78.58 ± 20.44 | 79.00 ± 20.39 | 78.05 ± 20.48 | 76.79 ± 20.57* |
| Preoperative PT of one day before valve replacement (s) | 13.22 ± 3.61 | 13.23 ± 3.69 | 13.13 ± 3.19 | 13.39 ± 4.03 |
| preoperative APTT of one day before valve replacement (s) | 31.64 ± 8.30 | 31.43 ± 8.03 | 31.13 ± 7.96 | 34.02 ± 10.40* |
| Preoperative INR | 1.12 ± 0.46 | 1.12 ± 0.46 | 1.12 ± 0.52 | 1.12 ± 0.35 |
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| ||||
| I class | 184 (1.2) | 130 (1.2) | 45 (1.3) | 9 (0.6) |
| II class | 3646 (23.2) | 2480 (23.2) | 808 (22.7) | 358 (24.5) |
| III class | 11323 (72.1) | 7687 (72.0) | 2601 (73.1) | 1035 (70.7) |
| IV class | 541 (3.4) | 376 (3.5) | 104 (2.9) | 61 (4.2) |
| Mitral valve surgery (replacement) | 11241 (71.6) | 7624 (71.4) | 2524 (70.9) | 1093 (74.7)* |
| TricuspidValvesurgery (replacement) | 6338 (40.4) | 4314 (40.4) | 1461 (41.1) | 563 (38.5) |
| Aortic valve surgery (replacement) | 8385 (53.4) | 5715 (53.5) | 1942 (54.6) | 728 (49.8)* |
| Pulmonary artery surgery (replacement) | 37 (0.2) | 20 (0.2) | 11 (0.3) | 6 (0.4) |
| Left atrial appendage occlusion (treatment) | 1177 (7.5) | 766 (7.2) | 249 (7.0) | 162 (11.1)* |
| Thrombus removal | 1197 (7.6) | 799 (7.5) | 269 (7.6) | 129 (8.8) |
| Radiofrequency ablation | 1299 (8.3) | 871 (8.2) | 310 (8.7) | 118 (8.1) |
| Origin of warfarin (made in China) | 7733 (49.3) | 5433 (50.9) | 1760 (49.5) | 540 (36.9)* |
| The time of first anticoagulant (n days after surgery) | 1.88 ± 1.5 | 1.88 ± 1.06 | 1.87 ± 1.05 | 1.92 ± 1.01 |
| Maintenance dose at discharge time (mg/d) | 2.73 ± 0.73 | 2.73 ± 0.74 | 2.75 ± 0.74 | 2.69 ± 0.70 |
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| Low-dose | 2117 (13.5) | 1454 (13.6) | 465 (13.1) | 198 (13.5) |
| intermediate-dose | 11848 (75.5) | 8077 (75.7) | 2678 (75.3) | 1093 (74.7) |
| High-dose steady-state INR | 1729 (11.0) | 1142 (10.7) | 415 (11.7) | 172 (11.8) |
Note: *P < 0.05 (independent sample t-test of a certain characteristic between the external validation and the training group); Han = 0, all ethnic = 1; BSA: Body surface area = 0.0061 × height (cm) + 0.0128 × weight (kg) − 0.1529; EF: Ejection fraction; LVDD: Left ventricular end diastolic dimension, LAD: Left atrial diameter; RAD: Right atrial diameter; ALT: Alanine transaminase; AST: Aspartate aminotransferase; APTT: Activated partial thromboplastin time; INR: International normalized ratio.
Variables after screened by the analysis of covariance.
| Included variables (unit) | partial |
|---|---|
| Age (year) | 0.002 |
| EF (%) | 0.001 |
| Left ventricular diastolic diameter (mm) | 0.001 |
| Operation history | 0.001 |
| Albumin (g/L) | 0.001 |
| Urea nitrogen (mmol/L) | 0.001 |
| Creatinine (umol/L) | 0.003 |
| preoperative APTT of one day before valve replacement (s) | 0.004 |
| Warfarin origin | 0.66 |
| The time of first anticoagulant (d) | 0.06 |
Note: APTT: Activated partial thromboplastin time.
EF: Ejection fraction.
Operation history: it is a categorical variable and means whether the included patient has done other surgery before heart valve replacement, we used 1 to represent patient not having done other surgery and 2 to represent patient having done other surgery.
Warfarin origin: it is also a categorical variable and means where the warfarin is made in, China or abroad, we used 1 to represent warfarin made in China and 2 to represent warfarin made abroad.
Figure 3The fitness curve of BP-GA.
Figure 4Predicted vs. actual warfarin maintenance dose in the internal validation.
Figure 5Predicted vs. actual warfarin maintenance dose in the external validation.
The Comparison of total predication accuracy of the BP-GA.
| Model | MAE* | RMSE* | Predicted percentage | ||
|---|---|---|---|---|---|
| Underestimate (%) | Ideal (%)** | Overestimate (%) | |||
| BP-GAiv | 0.383 (0.365~0.401) | 0.664 (0.631~0.696) | 746 (21.0) | 2088 (58.7) | 724 (20.3) |
| BP-GAv | 0.370 (0.342~0.397) | 0.656 (0.606~0.704) | 257 (17.6) | 920 (62.9) | 286 (19.5) |
Note: BP-GAiv: the internal validation group.
BP-GAev: the external validation group.
*P < 0.05 (independent sample t-test of the MAE and RMSE between the internal and external validation group, respectively).
**P < 0.05 (chi-square test the ideal percentage between the internal and external validation group).
Ideal: the percentage of patients whose predicted absolute error between predicted dose and actual dose was within 20% of actual dose.
Underestimate: the percentage of patients whose predicted dose was less than actual dose and the predicted absolute error between predicted dose and actual dose was more than 20% of the actual dose.
Overestimate: the percentage of patients whose predicted dose was more than actual dose and the predicted absolute error between predicted dose and actual dose was more than 20% of the actual dose.
Comparison of the models’ predicated percentage of dose subgroup
| Model | Low dose subgroup < = 2.5 mg/d | Intermediate dose subgroup 2.5~3.0 mg/d | High dose subgroup > = 3.0 mg/d | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Underestimate (%) | Ideal (%) | Overestimate (%) | Underestimate (%) | Ideal** (%) | Overestimate (%) | Underestimate (%) | Ideal (%) | Overestimate (%) | |
| BP-GA iv | 0 (0.0) | 1 (0.2) | 464 (99.8) | 334 (12.4) | 2085 (77.9) | 259 (9.7) | 412 (99.3) | 2 (0.5) | 1 (0.2) |
| BP-GA ev | 0 (0.0) | 0 (0.0) | 198 (100) | 85 (7.8) | 920 (84.2) | 88 (8.1) | 172 (100) | 0 (0.0) | 0 (0.0) |
Note: BP-GA iv: the internal validation group; BP-GA ev: the external validation group.
**P < 0.05 (chi-square test the ideal percentage between the internal and external validation group).
Ideal: the percentage of patients whose predicted absolute error between predicted dose and actual dose was within 20% of actual dose.
Underestimate: the percentage of patients whose predicted dose was less than actual dose and the predicted absolute error between predicted dose and actual dose was more than 20% of the actual dose.
Overestimate: the percentage of patients whose predicted dose was more than actual dose and the predicted absolute error between predicted dose and actual dose was more than 20% of the actual dose.