Literature DB >> 29942005

Defining distance restraints in HADDOCK.

Alexandre M J J Bonvin1, Ezgi Karaca2, Panagiotis L Kastritis3, João P G L M Rodrigues4.   

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Year:  2018        PMID： 29942005     DOI： 10.1038/s41596-018-0017-6

Source DB:  PubMed          Journal:  Nat Protoc        ISSN： 1750-2799            Impact factor:   13.491


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  7 in total

1.  Flexibility of intrinsically disordered degrons in AUX/IAA proteins reinforces auxin co-receptor assemblies.

Authors:  Michael Niemeyer; Elena Moreno Castillo; Christian H Ihling; Claudio Iacobucci; Verona Wilde; Antje Hellmuth; Wolfgang Hoehenwarter; Sophia L Samodelov; Matias D Zurbriggen; Panagiotis L Kastritis; Andrea Sinz; Luz Irina A Calderón Villalobos
Journal:  Nat Commun       Date:  2020-05-08       Impact factor: 14.919

2.  In Silico Phylogenetic and Structural Analyses of Plant Endogenous Danger Signaling Molecules upon Stress.

Authors:  Athanasia Pavlopoulou; Ezgi Karaca; Alma Balestrazzi; Alexandros G Georgakilas
Journal:  Oxid Med Cell Longev       Date:  2019-07-15       Impact factor: 6.543

3.  The Plasma Factor XIII Heterotetrameric Complex Structure: Unexpected Unequal Pairing within a Symmetric Complex.

Authors:  Sneha Singh; Alexis Nazabal; Senthilvelrajan Kaniyappan; Jean-Luc Pellequer; Alisa S Wolberg; Diana Imhof; Johannes Oldenburg; Arijit Biswas
Journal:  Biomolecules       Date:  2019-11-21

4.  A general chemical crosslinking strategy for structural analyses of weakly interacting proteins applied to preTCR-pMHC complexes.

Authors:  Réka Mizsei; Xiaolong Li; Wan-Na Chen; Monika Szabo; Jia-Huai Wang; Gerhard Wagner; Ellis L Reinherz; Robert J Mallis
Journal:  J Biol Chem       Date:  2021-01-08       Impact factor: 5.486

5.  Shape shifting: The multiple conformational substates of the PTEN N-terminal PIP2 -binding domain.

Authors:  Jennifer E Dawson; Iris Nira Smith; William Martin; Krishnendu Khan; Feixiong Cheng; Charis Eng
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.993

Review 6.  Bioinformatics Tools and Benchmarks for Computational Docking and 3D Structure Prediction of RNA-Protein Complexes.

Authors:  Chandran Nithin; Pritha Ghosh; Janusz M Bujnicki
Journal:  Genes (Basel)       Date:  2018-08-25       Impact factor: 4.096

7.  Synergistic recruitment of UbcH7~Ub and phosphorylated Ubl domain triggers parkin activation.

Authors:  Tara Ec Condos; Karen M Dunkerley; E Aisha Freeman; Kathryn R Barber; Jacob D Aguirre; Viduth K Chaugule; Yiming Xiao; Lars Konermann; Helen Walden; Gary S Shaw
Journal:  EMBO J       Date:  2018-11-16       Impact factor: 11.598
  7 in total

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