Literature DB >> 29941451

Meeting report - INDEPTH kick-off meeting.

Geraint Parry1, Aline V Probst2, Célia Baroux3, Christophe Tatout4.   

Abstract

The precise location of chromatin domains within the cell nucleus has seen growing recognition in the past decade as an additional mechanism of controlling gene expression in both plants and animals (Dekker et al., 2017). Consequently, international efforts are devoted to understanding the organising principle of this organelle in plants, and notably the nature and the role of functional compartments on gene expression (Graumann et al., 2013; Sotelo-Silveira et al., 2018). The European cooperation 'Impact of Nuclear Domains on Gene Expression and Plant Traits' (INDEPTH) brings together molecular cell biologists, plant physiologists, bioinformaticians, image analysts and computer scientists. They aim to address the question of how nuclear architecture, chromatin organisation and gene expression are connected in plants, particularly in relation to traits of interest such as biomass, reproduction and resistance to pathogens (https://www.brookes.ac.uk/indepth/). The kick-off meeting of the INDEPTH consortium took place in Clermont-Ferrand, France, on 12-14th March 2018, where more than 80 researchers set the agenda for the coming four years of research and collaboration.
© 2018. Published by The Company of Biologists Ltd.

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Year:  2018        PMID: 29941451     DOI: 10.1242/jcs.220558

Source DB:  PubMed          Journal:  J Cell Sci        ISSN: 0021-9533            Impact factor:   5.285


  3 in total

1.  Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions.

Authors:  Tao Dumur; Susan Duncan; Katja Graumann; Sophie Desset; Ricardo S Randall; Ortrun Mittelsten Scheid; Dimiter Prodanov; Christophe Tatout; Célia Baroux
Journal:  Nucleus       Date:  2019-12       Impact factor: 4.197

2.  The INDEPTH (Impact of Nuclear Domains on Gene Expression and Plant Traits) Academy: a community resource for plant science.

Authors:  Christophe Tatout; Guillaume Mougeot; Geraint Parry; Célia Baroux; Mónica Pradillo; David Evans
Journal:  J Exp Bot       Date:  2022-04-05       Impact factor: 6.992

3.  Automated 3D bio-imaging analysis of nuclear organization by NucleusJ 2.0.

Authors:  Tristan Dubos; Axel Poulet; Céline Gonthier-Gueret; Guillaume Mougeot; Emmanuel Vanrobays; Yanru Li; Sylvie Tutois; Emilie Pery; Frédéric Chausse; Aline V Probst; Christophe Tatout; Sophie Desset
Journal:  Nucleus       Date:  2020-12       Impact factor: 4.197

  3 in total

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