| Literature DB >> 29940817 |
Xiuyun Li1, Geping Yin1, Juan Li1, Aifang Wu1, Zheng Yuan1, Jing Liang1, Qinghua Sun1.
Abstract
To investigate the association between the susceptibility to cervical cancer and the single nucleotide polymorphisms of 5 tumor necrosis factor-α promoter genes (rs361525, rs1800629, rs1800750, rs1799964, and rs673) in Chinese women. A total of 946 peripheral blood samples were collected from women of Han Ethnicity in Shandong province. Of them, 452 were diagnosed with cervical squamous cell carcinomas. The study also included a control group of 494 healthy women. The targeted single nucleotide polymorphisms were analyzed by TaqMan probe method. (1) The rate of high-risk subtype human papillomavirus infection in exfoliated cervical epithelial cells was significantly higher in patients with cervical cancer than the control group (91.4% vs 10.3%, P < .01). The rate of human papillomavirus infection was lower in patients with carcinoma in situ than those with invasive carcinoma (77.9% vs 95.4%, P < .01). (2) There was a significant difference for rs361525 genotype (CC/CT/TT) between the control, carcinoma in situ, and invasive carcinoma groups ( P < .001). Both rs1800629 and rs1799964 genotypes (both GG/GA/AA) were also different between these groups ( P < .001 and P < .001). (3) The allele frequencies of rs361525, rs1800629, and rs1799964 were significantly correlated with the diagnosis of cervical cancer. The frequency of T allele in rs361525 was significantly higher for cervical cancer group (10.8%) than control group (3.8%; odds ratio = 3.04, 95% confidence interval = 1.76-5.25, P < .01). The frequency of A allele in rs1800629 was significantly higher for cervical cancer (29.9%) than control group (14.2%; odds ratio = 2.58, 95% confidence interval = 1.87-3.56, P < .01). The frequency of A allele in rs1799964 was also higher for cervical cancer group (38.3%) than control group (16.4%; odds ratio = 1.43, 95% confidence interval = 1.07-1.91, P < .05). The rs361525, rs1800629, and rs17999645 were significantly correlated with the diagnosis of cervical cancer.Entities:
Keywords: TNF-α; and rs673; cervical cancer; gene polymorphism; genetic susceptibility; rs1799964; rs1800629; rs1800750; rs361525
Mesh:
Substances:
Year: 2018 PMID: 29940817 PMCID: PMC6048659 DOI: 10.1177/1533033818782793
Source DB: PubMed Journal: Technol Cancer Res Treat ISSN: 1533-0338
TaqMan Probes and Sequences.
| SNP Site | Items | Sequence |
|---|---|---|
| rs361525 | Forward primer | CTCGGTTTCTTCTCCATCGC |
| Reverse primer | CAGCCTCCAGGGTCCTACAC | |
| Wild probe | TET-TCCCCATCCTCCCTGCTCtG ATT-BHQ | |
| Mutation probe | FAM-CCCATCCTCCCTGCTCcG ATT-BHQ | |
| rs1800629 | Forward primer | TTAGAAGGAAACAGACCACAG ACCT |
| Reverse primer | GTAGGACCCTGGAGGCTGAAC | |
| Wild probe | TET-TAGGTTTTGAGGGGCATGa GGACG-BHQ | |
| Mutation probe | FAM-TAGGTTTTGAGGGGCATGg GGAC-BHQ | |
| rs1800750 | Forward primer | CTTTCTGAAGCCCCTCCCA |
| Reverse primer | TGCCCCTCAAAACCTATTGC | |
| Wild probe | TET-CCTGCATCCTGTC TGGAAaTTAGAAGGA-BHQ | |
| Mutation probe | FAM-CCTGCATCCTGTC TGGAAgTTAGAAGG-BHQ | |
| rs1799964 | Forward primer | CATTCCTCAGAGCCGCTACAT |
| Reverse primer | GGGATATGTGATGGACTCACCAG | |
| Wild probe | TET-CTCCAGACCCTG ACTTTTCCTTCgTC-BHQ | |
| Mutation probe | FAM-CCTCCAGACCCTGA CTTTTCCTTCaTC-BHQ | |
| rs673 | forward primer | GGGTCCTACACACAAATCAGTC AGT |
| Reverse primer | CCCTCACACTCCCCATCCT | |
| Wild probe | TET-AAGACCCCCCTCgGA-MGB | |
| Mutation probe | FAM-AAGACCCCCCTCaGA-MGB |
Abbreviation: SNP, single nucleotide polymorphisms.
Comparison of Demographics and HPV Infection Between Cervical Cancer Group, CIS Group, and Control Group.
| Group | N | Age | Age at First Marriage | Pregnancy (N) | Delivery (N) | Employed % (n) | χ2/ | Smoking % (n) | χ2/ | HPV Infection % (n) | χ2/ |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cervical cancer | 452 | 47.0 ± 14.5 | 24.5 ± 2.0 | 4.2 ± 2.0 | 2.4 ± 1.1 | 42.0% (190) | 19.9% (90) | 91.4% (413) | |||
| CIS | 104 | 42.5 ± 8.5 | 25.0 ± 2.3 | 4.7 ± 1.7 | 2.2 ± 0.7 | 76.9% (80) | χ2 = 1 62/ | 32.7% (34) | χ2 = 0.98/ | 77.9% (81) | χ2 = 620.4/ |
| IC | 348 | 49.7 ± 16.5 | 22.1 ± 3.7 | 4.3 ± 1.5 | 2.9 ± 1.6 | 28.6% (110) | 16.1% (56) | 95.4% (332) | |||
| Control | 494 | 47.0 ± 15.5 | 24.8 ± 3.1 | 5.1 ± 2.8 | 2.3 ± 1.7 | 46.2% (228) | 17.4% (86) | 10.3% (51) |
Abbreviations: CIS, carcinoma in situ; IC, invasive carcinoma; HPV, human papillomavirus.
a Used χ2 test.
Results of TNF-α Promoter Gene SNP Genotype by Group.a
| Group | N | rs361525 (N) | χ2/ | rs1800629 (N) | χ2/ | rs1800750 (N) | χ2/ | rs1799964 (N) | χ2/ | rs673 (N) | χ2/ | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CC | CT | TT | GG | AG | AA | GG | AG | AA | GG | AG | AA | GG | AG | AA | |||||||
| Control | 494 | 475 | 19 | 0 | 424 | 70 | 0 | 492 | 2 | 0 | 410 | 81 | 3 | 483 | 11 | 0 | |||||
| Cervical squamous cell carcinoma | 452 | 403 | 49 | 0 | χ2 = 20.707 | 317 | 135 | 0 | χ2 = 34.916 | 450 | 2 | 0 | χ2 = 2.539 | 275 | 173 | 4 | χ2 = 57.396 | 440 | 12 | 0 | χ2 = 0.212 |
| Carcinoma In situ | 104 | 97 | 7 | 0 |
| 76 | 28 | 0 |
| 104 | 0 | 0 |
| 67 | 37 | 1 |
| 101 | 3 | 0 |
|
| Invasive carcinoma | 348 | 306 | 42 | 0 | 241 | 107 | 0 | 344 | 4 | 0 | 212 | 136 | 3 | 339 | 9 | 0 | |||||
Abbreviations: TNF-α, tumor necrosis factor-α; SNP, single nucleotide polymorphisms.
a C-cytosine; T-thymidine; A-adenine, and G-guanine. The base pair of rs361525 gene is C and T, where CC and TT being homozygous and CT being heterozygous; the base pair for other 4 SNP sites were all G, A, GG, and AA being homozygous, and AG being heterozygous.
b Used the Cochran-Mantel-Haenszel (CMH) test.
Allele Frequencies of the 5 SNPs of TNF-α Promoter Gene by Groups.a
| SNPs | Allele frequency | χ2/ | OR (95% CI) | P | |||||
|---|---|---|---|---|---|---|---|---|---|
| Control group (N = 494) | Cervical Cancer group (N = 452) | ||||||||
| Homozygous | Heterozygous | Homozygous | Heterozygous | G/(C*) | A/(T*) | G/(C*) | A/(T*) | ||
| rs361525 | 0.962 (475) | 0.038 (19) | 0.892 (403) | 0.108 (49) | χ2 = 17.3/ | 0.33 (0.19-0.57) | 3.04 (1.76-5.25) | <.01 | <.01 |
| rs1800629 | 0.858 (424) | 0.142 (70) | 0.701 (317) | 0.299 (135) | χ2 = 34.3/ | 0.39 (0.28-0.54) | 2.58 (1.87-3.56) | <.01 | <.01 |
| rs1800750 | 0.996 (492) | 0.004 (2) | 0.996 (450) | 0.004 (2) | χ2 = 0.008/ | 1.09 (0.15-7.79) | 0.92 (0.13-6.52) | .929 | .929 |
| rs1799964 | 0.836 (413) | 0.164 (81) | 0.617 (279) | 0.383 (173) | χ2 = 57.52/ | 0.32 (0.23-0.43) | 3.16 (2.33-4.28) | <.01 | <.01 |
| rs673 | 0.978 (483) | 0.022 (11) | 0.973 (440) | 0.027 (12) | χ2 = 0.182/ | 0.84 (0.37-1.91) | 1.20 (0.52-2.74) | 0.6697 | 0.6697 |
Abbreviations: OR, odds ratio; SNP, single nucleotide polymorphisms; TNF-α, tumor necrosis factor-α.
a OR using the recessive genetic model (OR = 1, indicating that the factor does not influence the occurrence of the disease; OR > 1, indicating that the factor is a risk factor; OR < 1, indicating that the factor is protective factors). The allele base of the rs361525 allele is C, T, CC, and TT being homozygous, CT being heterozygous; the other 4 sites are G, A, GG, and AA being homozygous, and AG being heterozygous.
b Used χ2 test.
Comparison of Genotype and Allele Frequency of 5 Loci Between Patients With CIS and IC.
| SNP Locus | Group | N | Genotype Frequency (%) | χ2/ | Allele Frequency (%) | χ2/ | |||
|---|---|---|---|---|---|---|---|---|---|
| CC/GG | CT/GA | TT/AA | C/G | T/A | |||||
| rs361525 | Carcinoma in situ | 104 | 97 (93.3) | 7 (6.7) | 0 (0.0) | χ2 = 2.356/ | 201 (96.6) | 7 (3.4) | χ2 = 2.225/ |
| Invasive cancer | 348 | 306 (87.9) | 42 (12.1) | 0 (0.0) | 654 (94.0) | 42 (6.0) | |||
| rs1800629 | Carcinoma in situ | 104 | 76 (73.1) | 28 (26.9) | 0 (0.0) | χ2 = 0.558/ | 180 (86.5) | 28 (13.5) | χ2 = 9.474/ |
| Invasive cancer | 348 | 241 (69.3) | 107 (30.7) | 0 (0.0) | 589 (93.3) | 42 (6.7) | |||
| rs1800750 | Carcinoma in situ | 104 | 104 (100.0) | 0 (0.0) | 0 (0.0) | χ2 = 1.203/ | 208 (100.0) | 0 (0.0) |
|
| Invasive cancer | 348 | 344 (98.9) | 4 (1.1) | 0 (0.0) | 692 (99.4) | 4 (0.6) | |||
| rs1799964 | Carcinoma in situ | 104 | 66 (64.3) | 37 (35.6) | 1 (0.01) | χ2 = 0.414/ | 171 (81.4) | 39 (18.6) | χ = 0.279/ |
| Invasive cancer | 348 | 209 (60.0) | 136 (39.1) | 3 (0.9) | 692 (83.0) | 142 (17.0) | |||
| rs673 | Carcinoma in situ | 104 | 101 (97.1) | 3 (2.9) | 0 (0.0) | χ2 = 028/ | 205 (98.6) | 3 (1.4) | χ2 = 0.000/ |
| Invasive cancer | 348 | 339 (98.9) | 9 (1.1) | 0 (0.0) | 692 (98.7) | 9 (1.3) | |||
Abbreviations: CIS, carcinoma in situ; IC, invasive carcinoma; SNP, single nucleotide polymorphisms.
a Using Cochran-Mantel-Haenszel (CMH) test.
b Using χ2 test.
c Using Fisher test.
d Use continuity correction card.