Literature DB >> 29937356

Toward an Ensemble View of Chromatosome Structure: A Paradigm Shift from One to Many.

Mehmet Ali Öztürk1, Vlad Cojocaru2, Rebecca C Wade3.   

Abstract

There is renewed interest in linker histone (LH)-nucleosome binding and how LHs influence eukaryotic DNA compaction. For a long time, the goal was to uncover "the structure of the chromatosome," but recent studies of LH-nucleosome complexes have revealed an ensemble of structures. Notably, the reconstituted LH-nucleosome complexes used in experiments rarely correspond to the sequence combinations present in organisms. For a full understanding of the determinants of the distribution of the chromatosome structural ensemble, studies must include a complete description of the sequences and experimental conditions used, and be designed to enable systematic evaluation of sequence and environmental effects.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Keywords:  NMR; X-ray crystallography; chromatin; chromatosome; cryo-EM; linker histone; macromolecular dynamics; macromolecular structure; nucleosome

Mesh:

Substances:

Year:  2018        PMID: 29937356     DOI: 10.1016/j.str.2018.05.009

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  11 in total

1.  Mesoscale modeling reveals formation of an epigenetically driven HOXC gene hub.

Authors:  Gavin D Bascom; Christopher G Myers; Tamar Schlick
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-04       Impact factor: 11.205

2.  Elucidating the influence of linker histone variants on chromatosome dynamics and energetics.

Authors:  Dustin C Woods; Jeff Wereszczynski
Journal:  Nucleic Acids Res       Date:  2020-04-17       Impact factor: 16.971

3.  Bridging chromatin structure and function over a range of experimental spatial and temporal scales by molecular modeling.

Authors:  Stephanie Portillo-Ledesma; Tamar Schlick
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2019-08-06

4.  The Dynamic Influence of Linker Histone Saturation within the Poly-Nucleosome Array.

Authors:  Dustin C Woods; Francisco Rodríguez-Ropero; Jeff Wereszczynski
Journal:  J Mol Biol       Date:  2021-03-02       Impact factor: 5.469

5.  Nucleosome plasticity is a critical element of chromatin liquid-liquid phase separation and multivalent nucleosome interactions.

Authors:  Stephen E Farr; Esmae J Woods; Jerelle A Joseph; Adiran Garaizar; Rosana Collepardo-Guevara
Journal:  Nat Commun       Date:  2021-05-17       Impact factor: 14.919

6.  DNA sequence-dependent positioning of the linker histone in a nucleosome: A single-pair FRET study.

Authors:  Madhura De; Mehmet Ali Öztürk; Sebastian Isbaner; Katalin Tóth; Rebecca C Wade
Journal:  Biophys J       Date:  2021-07-20       Impact factor: 3.699

7.  Molecular mechanism of histone variant H2A.B on stability and assembly of nucleosome and chromatin structures.

Authors:  Junhui Peng; Chuang Yuan; Xinfan Hua; Zhiyong Zhang
Journal:  Epigenetics Chromatin       Date:  2020-07-14       Impact factor: 4.954

8.  Sensitive effect of linker histone binding mode and subtype on chromatin condensation.

Authors:  Ognjen Perišić; Stephanie Portillo-Ledesma; Tamar Schlick
Journal:  Nucleic Acids Res       Date:  2019-06-04       Impact factor: 16.971

9.  Binding Dynamics of Disordered Linker Histone H1 with a Nucleosomal Particle.

Authors:  Hao Wu; Yamini Dalal; Garegin A Papoian
Journal:  J Mol Biol       Date:  2021-02-20       Impact factor: 6.151

Review 10.  A glitch in the snitch: the role of linker histone H1 in shaping the epigenome in normal and diseased cells.

Authors:  Ankita Saha; Yamini Dalal
Journal:  Open Biol       Date:  2021-08-04       Impact factor: 6.411

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