Literature DB >> 29936876

Role of Dimensionality in Predicting the Spontaneous Behavior of the Brain Using the Classical Ising Model and the Ising Model Implemented on a Structural Connectome.

Pubuditha M Abeyasinghe1,2, Demetrius Ribeiro de Paula1,2, Sina Khajehabdollahi1,2, Sree Ram Valluri1, Adrian M Owen2,3, Andrea Soddu1,2.   

Abstract

There is accumulating evidence that spontaneous fluctuations of the brain are sustained by a structural architecture of axonal fiber bundles. Various models have been used to investigate this structure-function relationship. In this work, we implemented the Ising model using the number of fibers between each pair of brain regions as input. The output of the Ising model simulations on a structural connectome was then compared with empirical functional connectivity data. A simpler two-dimensional classical Ising model was used as the baseline model for comparison purpose. Thermodynamic properties, such as the magnetic susceptibility and the specific heat, illustrated a phase transition from an ordered phase to a disordered phase at the critical temperature. Despite the differences between the two models, the lattice Ising model and the Ising model implemented on a structural connectome (the generalized Ising model) exhibited similar patterns of global properties. To study the behavior of the generalized Ising model around criticality, calculation of the dimensionality and critical exponents was performed for the first time, by introducing a new concept of distance based on structural connectivity. Same value inside the fitting error was found for the dimensionality in both models suggesting similar behavior of the models around criticality.

Entities:  

Keywords:  criticality; dimensionality; generalized Ising model; graph theory; structure–function relationship

Year:  2018        PMID: 29936876      PMCID: PMC6152861          DOI: 10.1089/brain.2017.0516

Source DB:  PubMed          Journal:  Brain Connect        ISSN: 2158-0014


  31 in total

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Review 2.  Exploring the brain network: a review on resting-state fMRI functional connectivity.

Authors:  Martijn P van den Heuvel; Hilleke E Hulshoff Pol
Journal:  Eur Neuropsychopharmacol       Date:  2010-05-14       Impact factor: 4.600

3.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

4.  Cerebral functional connectivity periodically (de)synchronizes with anatomical constraints.

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Journal:  Brain Struct Funct       Date:  2015-07-22       Impact factor: 3.270

5.  Ising model with conserved magnetization on the human connectome: Implications on the relation structure-function in wakefulness and anesthesia.

Authors:  S Stramaglia; M Pellicoro; L Angelini; E Amico; H Aerts; J M Cortés; S Laureys; D Marinazzo
Journal:  Chaos       Date:  2017-04       Impact factor: 3.642

6.  Multiple fMRI system-level baseline connectivity is disrupted in patients with consciousness alterations.

Authors:  Athena Demertzi; Francisco Gómez; Julia Sophia Crone; Audrey Vanhaudenhuyse; Luaba Tshibanda; Quentin Noirhomme; Marie Thonnard; Vanessa Charland-Verville; Murielle Kirsch; Steven Laureys; Andrea Soddu
Journal:  Cortex       Date:  2013-11-20       Impact factor: 4.027

7.  Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in python.

Authors:  Krzysztof Gorgolewski; Christopher D Burns; Cindee Madison; Dav Clark; Yaroslav O Halchenko; Michael L Waskom; Satrajit S Ghosh
Journal:  Front Neuroinform       Date:  2011-08-22       Impact factor: 4.081

8.  Ising-like dynamics in large-scale functional brain networks.

Authors:  Daniel Fraiman; Pablo Balenzuela; Jennifer Foss; Dante R Chialvo
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-06-23

9.  The connectome mapper: an open-source processing pipeline to map connectomes with MRI.

Authors:  Alessandro Daducci; Stephan Gerhard; Alessandra Griffa; Alia Lemkaddem; Leila Cammoun; Xavier Gigandet; Reto Meuli; Patric Hagmann; Jean-Philippe Thiran
Journal:  PLoS One       Date:  2012-12-18       Impact factor: 3.240

10.  Non-parametric representation and prediction of single- and multi-shell diffusion-weighted MRI data using Gaussian processes.

Authors:  Jesper L R Andersson; Stamatios N Sotiropoulos
Journal:  Neuroimage       Date:  2015-07-30       Impact factor: 6.556

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  4 in total

1.  A comparison of diffusion tractography techniques in simulating the generalized Ising model to predict the intrinsic activity of the brain.

Authors:  Pubuditha M Abeyasinghe; Marco Aiello; Carlo Cavaliere; Adrian M Owen; Andrea Soddu
Journal:  Brain Struct Funct       Date:  2021-02-01       Impact factor: 3.270

2.  The Emergence of Integrated Information, Complexity, and 'Consciousness' at Criticality.

Authors:  Nicholas J M Popiel; Sina Khajehabdollahi; Pubuditha M Abeyasinghe; Francesco Riganello; Emily S Nichols; Adrian M Owen; Andrea Soddu
Journal:  Entropy (Basel)       Date:  2020-03-16       Impact factor: 2.524

3.  Self-organized criticality as a framework for consciousness: A review study.

Authors:  Nike Walter; Thilo Hinterberger
Journal:  Front Psychol       Date:  2022-07-15

4.  Consciousness and the Dimensionality of DOC Patients via the Generalized Ising Model.

Authors:  Pubuditha M Abeyasinghe; Marco Aiello; Emily S Nichols; Carlo Cavaliere; Salvatore Fiorenza; Orsola Masotta; Pasquale Borrelli; Adrian M Owen; Anna Estraneo; Andrea Soddu
Journal:  J Clin Med       Date:  2020-05-04       Impact factor: 4.241

  4 in total

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